miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28926 3' -51.3 NC_006146.1 + 7160 1.12 0.006143
Target:  5'- cCCACUAAGGCCCACACACCUUACACAa -3'
miRNA:   3'- -GGUGAUUCCGGGUGUGUGGAAUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 7214 0.92 0.101673
Target:  5'- cCCACcAAGGCCCACGCGCCU-GCACAa -3'
miRNA:   3'- -GGUGaUUCCGGGUGUGUGGAaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 49565 0.75 0.713717
Target:  5'- aCCACUGAGGCCCA-GCGCUgagGC-CAg -3'
miRNA:   3'- -GGUGAUUCCGGGUgUGUGGaa-UGuGU- -5'
28926 3' -51.3 NC_006146.1 + 6991 0.75 0.734015
Target:  5'- cCCAacAAGGCCCACGCuucauCCU-GCACAa -3'
miRNA:   3'- -GGUgaUUCCGGGUGUGu----GGAaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 9479 0.74 0.763736
Target:  5'- cCCGC-GGGGCCaCACcCGCCUgGCACAg -3'
miRNA:   3'- -GGUGaUUCCGG-GUGuGUGGAaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 61977 0.74 0.773411
Target:  5'- gCCGUUGAGGCCCACGuCACCUgcucgguCGCu -3'
miRNA:   3'- -GGUGAUUCCGGGUGU-GUGGAau-----GUGu -5'
28926 3' -51.3 NC_006146.1 + 60734 0.72 0.853371
Target:  5'- gCGCUGAGGCCCugGacagagaucCGCCaagACACGc -3'
miRNA:   3'- gGUGAUUCCGGGugU---------GUGGaa-UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 37124 0.72 0.853371
Target:  5'- cUCugUGagggaaacAGGCCCACugACCUUACu-- -3'
miRNA:   3'- -GGugAU--------UCCGGGUGugUGGAAUGugu -5'
28926 3' -51.3 NC_006146.1 + 10916 0.72 0.876514
Target:  5'- aCCACUGaaAGGCCCGCGaaaUUUugGCAu -3'
miRNA:   3'- -GGUGAU--UCCGGGUGUgugGAAugUGU- -5'
28926 3' -51.3 NC_006146.1 + 160915 0.72 0.883776
Target:  5'- gCCACaAuuGCUCACAC-CCUUACACGc -3'
miRNA:   3'- -GGUGaUucCGGGUGUGuGGAAUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 41769 0.72 0.883776
Target:  5'- cCCGCcgGAGGCCCuGCGC-CCggGCGCc -3'
miRNA:   3'- -GGUGa-UUCCGGG-UGUGuGGaaUGUGu -5'
28926 3' -51.3 NC_006146.1 + 129047 0.72 0.883776
Target:  5'- cCCGagcuGGGCCCAgACGCCg-GCGCAg -3'
miRNA:   3'- -GGUgau-UCCGGGUgUGUGGaaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 79068 0.71 0.910432
Target:  5'- uCCACc--GGCCaGCACACCUUcuuCACAa -3'
miRNA:   3'- -GGUGauuCCGGgUGUGUGGAAu--GUGU- -5'
28926 3' -51.3 NC_006146.1 + 121709 0.7 0.922278
Target:  5'- cCCAUggucuccGAGGCCCuGCACACCUUcgAgACGg -3'
miRNA:   3'- -GGUGa------UUCCGGG-UGUGUGGAA--UgUGU- -5'
28926 3' -51.3 NC_006146.1 + 13548 0.7 0.927823
Target:  5'- cCUGCUGcAGGCgCCGgGCGCCgggcUGCGCAa -3'
miRNA:   3'- -GGUGAU-UCCG-GGUgUGUGGa---AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 58855 0.7 0.927823
Target:  5'- aCCGCUGAGcuGCCCACccCACCUgACGgAa -3'
miRNA:   3'- -GGUGAUUC--CGGGUGu-GUGGAaUGUgU- -5'
28926 3' -51.3 NC_006146.1 + 159594 0.7 0.931555
Target:  5'- gCUGCUGAGGUCCgaguuguagaacugGCGCugCUgggGCACGc -3'
miRNA:   3'- -GGUGAUUCCGGG--------------UGUGugGAa--UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 131710 0.7 0.933117
Target:  5'- aCUACUGcGGCCUGCugauggGCACCUgagagACACGg -3'
miRNA:   3'- -GGUGAUuCCGGGUG------UGUGGAa----UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 40118 0.7 0.938159
Target:  5'- aCGCUuuuggaGAGGCCCGCGauguCCUUGCGg- -3'
miRNA:   3'- gGUGA------UUCCGGGUGUgu--GGAAUGUgu -5'
28926 3' -51.3 NC_006146.1 + 15201 0.7 0.94295
Target:  5'- cCCAC-AAGGaCCCACACGCgUc-CGCAg -3'
miRNA:   3'- -GGUGaUUCC-GGGUGUGUGgAauGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.