miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28926 3' -51.3 NC_006146.1 + 24435 0.7 0.94295
Target:  5'- cCCAC-AAGGaCCCACACGCgUc-CGCAg -3'
miRNA:   3'- -GGUGaUUCC-GGGUGUGUGgAauGUGU- -5'
28926 3' -51.3 NC_006146.1 + 15201 0.7 0.94295
Target:  5'- cCCAC-AAGGaCCCACACGCgUc-CGCAg -3'
miRNA:   3'- -GGUGaUUCC-GGGUGUGUGgAauGUGU- -5'
28926 3' -51.3 NC_006146.1 + 18279 0.7 0.94295
Target:  5'- cCCAC-AAGGaCCCACACGCgUc-CGCAg -3'
miRNA:   3'- -GGUGaUUCC-GGGUGUGUGgAauGUGU- -5'
28926 3' -51.3 NC_006146.1 + 21357 0.7 0.94295
Target:  5'- cCCAC-AAGGaCCCACACGCgUc-CGCAg -3'
miRNA:   3'- -GGUGaUUCC-GGGUGUGUGgAauGUGU- -5'
28926 3' -51.3 NC_006146.1 + 46756 0.69 0.947494
Target:  5'- aCAUUGGGGCCaugcugccaaACGCGCCaccGCACAg -3'
miRNA:   3'- gGUGAUUCCGGg---------UGUGUGGaa-UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 120002 0.69 0.947934
Target:  5'- gCACgGAGGCCCAggcCGCACCcgcggccaguccggGCACAg -3'
miRNA:   3'- gGUGaUUCCGGGU---GUGUGGaa------------UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 122559 0.69 0.949242
Target:  5'- cCCGCUGGccagacuggacgccuGGCCCAC-CACCgccaGCACc -3'
miRNA:   3'- -GGUGAUU---------------CCGGGUGuGUGGaa--UGUGu -5'
28926 3' -51.3 NC_006146.1 + 78811 0.69 0.951791
Target:  5'- cCCuggGAGGCCCACGCGuCCagGCAg- -3'
miRNA:   3'- -GGugaUUCCGGGUGUGU-GGaaUGUgu -5'
28926 3' -51.3 NC_006146.1 + 5248 0.69 0.951791
Target:  5'- gCugUGGGGUCCACGgACCcaACGCc -3'
miRNA:   3'- gGugAUUCCGGGUGUgUGGaaUGUGu -5'
28926 3' -51.3 NC_006146.1 + 58620 0.69 0.951791
Target:  5'- aCCACgaaAGGuGCCCGgGCAUCUU-CACGg -3'
miRNA:   3'- -GGUGa--UUC-CGGGUgUGUGGAAuGUGU- -5'
28926 3' -51.3 NC_006146.1 + 33979 0.69 0.955846
Target:  5'- uCCGCU-GGGUCCGCugGuCCggUGCACc -3'
miRNA:   3'- -GGUGAuUCCGGGUGugU-GGa-AUGUGu -5'
28926 3' -51.3 NC_006146.1 + 54777 0.69 0.955846
Target:  5'- gCGC-AGGGCCgccagggaGCGCGCCUUGgGCAg -3'
miRNA:   3'- gGUGaUUCCGGg-------UGUGUGGAAUgUGU- -5'
28926 3' -51.3 NC_006146.1 + 48246 0.69 0.955846
Target:  5'- gCCGCgcggAGGGCCCcCGCcGCCguccugGCGCGa -3'
miRNA:   3'- -GGUGa---UUCCGGGuGUG-UGGaa----UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 7107 0.69 0.963246
Target:  5'- cCCGCcAAGGCCCAgGCugCaUACu-- -3'
miRNA:   3'- -GGUGaUUCCGGGUgUGugGaAUGugu -5'
28926 3' -51.3 NC_006146.1 + 42854 0.69 0.966602
Target:  5'- gCCGCc-AGGCCCACGCGCagguucCACu -3'
miRNA:   3'- -GGUGauUCCGGGUGUGUGgaau--GUGu -5'
28926 3' -51.3 NC_006146.1 + 13630 0.68 0.969735
Target:  5'- aCC-CUGGGGCUgACgaucaaGCGCCggACACAg -3'
miRNA:   3'- -GGuGAUUCCGGgUG------UGUGGaaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 93145 0.68 0.972652
Target:  5'- cUCGCUAGGGCCUcugcgGCACuauCCggguCACAu -3'
miRNA:   3'- -GGUGAUUCCGGG-----UGUGu--GGaau-GUGU- -5'
28926 3' -51.3 NC_006146.1 + 128122 0.68 0.972652
Target:  5'- -gGCcGAGGCggCCACGCGCCgccUGCACc -3'
miRNA:   3'- ggUGaUUCCG--GGUGUGUGGa--AUGUGu -5'
28926 3' -51.3 NC_006146.1 + 127640 0.68 0.97536
Target:  5'- cCCGCUGccucuuguccAGGCCgCGCugGCGCCgagGCACc -3'
miRNA:   3'- -GGUGAU----------UCCGG-GUG--UGUGGaa-UGUGu -5'
28926 3' -51.3 NC_006146.1 + 60904 0.68 0.97536
Target:  5'- gCC-CUGAGGcCCCACAUcccgGCCUUAguCu -3'
miRNA:   3'- -GGuGAUUCC-GGGUGUG----UGGAAUguGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.