miRNA display CGI


Results 21 - 40 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28926 3' -51.3 NC_006146.1 + 18367 0.66 0.992758
Target:  5'- uUCACcuccAGGGCCCACAUcaugggaggGCUagUACACAc -3'
miRNA:   3'- -GGUGa---UUCCGGGUGUG---------UGGa-AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 15289 0.66 0.992758
Target:  5'- uUCACcuccAGGGCCCACAUcaugggaggGCUagUACACAc -3'
miRNA:   3'- -GGUGa---UUCCGGGUGUG---------UGGa-AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 9982 0.66 0.992758
Target:  5'- cUCACgcAGG-CCACGCGCUaUAUACGg -3'
miRNA:   3'- -GGUGauUCCgGGUGUGUGGaAUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 23180 0.66 0.99168
Target:  5'- cCCGCUAuuacccAGGCCC-CGcCGCCUUcCugGc -3'
miRNA:   3'- -GGUGAU------UCCGGGuGU-GUGGAAuGugU- -5'
28926 3' -51.3 NC_006146.1 + 118581 0.66 0.99168
Target:  5'- gCACcccGGCCCACgucagggucaGCACCU-ACGCGc -3'
miRNA:   3'- gGUGauuCCGGGUG----------UGUGGAaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 42420 0.66 0.99168
Target:  5'- cCCGCcguGGGCCCcCugGCC-UACAa- -3'
miRNA:   3'- -GGUGau-UCCGGGuGugUGGaAUGUgu -5'
28926 3' -51.3 NC_006146.1 + 90863 0.66 0.99168
Target:  5'- aCCGCUGucuGGCCgccaucauaaaGCACACCaUUugACGu -3'
miRNA:   3'- -GGUGAUu--CCGGg----------UGUGUGG-AAugUGU- -5'
28926 3' -51.3 NC_006146.1 + 155414 0.66 0.99168
Target:  5'- aCCACgucccCCCACACGCgCagGCACAg -3'
miRNA:   3'- -GGUGauuccGGGUGUGUG-GaaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 14676 0.66 0.99168
Target:  5'- uCCACggccgagGGGGCCCGCGucuccugcaacCACCUgGCGg- -3'
miRNA:   3'- -GGUGa------UUCCGGGUGU-----------GUGGAaUGUgu -5'
28926 3' -51.3 NC_006146.1 + 41621 0.66 0.99168
Target:  5'- uCCGCU-GGGCCCGgGCGCag-AC-CAg -3'
miRNA:   3'- -GGUGAuUCCGGGUgUGUGgaaUGuGU- -5'
28926 3' -51.3 NC_006146.1 + 152033 0.66 0.990479
Target:  5'- -gGCUGAGGCCCcCGCACgUc-CACc -3'
miRNA:   3'- ggUGAUUCCGGGuGUGUGgAauGUGu -5'
28926 3' -51.3 NC_006146.1 + 71863 0.66 0.990479
Target:  5'- cCCGCc-GGGCCCugGgggGCCUcUACACGg -3'
miRNA:   3'- -GGUGauUCCGGGugUg--UGGA-AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 71543 0.66 0.990479
Target:  5'- aCGCgc-GGCCCGgGCGCCg-ACGCu -3'
miRNA:   3'- gGUGauuCCGGGUgUGUGGaaUGUGu -5'
28926 3' -51.3 NC_006146.1 + 71080 0.66 0.990479
Target:  5'- uCCACcGAGGCCCcgaACACCcccuCGCc -3'
miRNA:   3'- -GGUGaUUCCGGGug-UGUGGaau-GUGu -5'
28926 3' -51.3 NC_006146.1 + 86830 0.66 0.990351
Target:  5'- cUCGCccguGGGCCUugGCaucauuuauaaauGCCUUGCAUAu -3'
miRNA:   3'- -GGUGau--UCCGGGugUG-------------UGGAAUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 137360 0.67 0.989145
Target:  5'- gCACcAGGGCCagGCAaGCCggGCACAa -3'
miRNA:   3'- gGUGaUUCCGGg-UGUgUGGaaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 115140 0.67 0.989145
Target:  5'- cUCGCUGccccuGGCCCGC-CGCCggGCGg- -3'
miRNA:   3'- -GGUGAUu----CCGGGUGuGUGGaaUGUgu -5'
28926 3' -51.3 NC_006146.1 + 21065 0.67 0.989145
Target:  5'- uUCGCcGAGGCCCugGcCGCCc-ACACc -3'
miRNA:   3'- -GGUGaUUCCGGGugU-GUGGaaUGUGu -5'
28926 3' -51.3 NC_006146.1 + 153941 0.67 0.989145
Target:  5'- uCCAggAAGGCCCGC-CGCUccccguuggGCACGg -3'
miRNA:   3'- -GGUgaUUCCGGGUGuGUGGaa-------UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 11952 0.67 0.987671
Target:  5'- cCCaACUuccuGGCCCGCuACGCCuUUACcuGCAg -3'
miRNA:   3'- -GG-UGAuu--CCGGGUG-UGUGG-AAUG--UGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.