miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28926 3' -51.3 NC_006146.1 + 65139 0.67 0.987671
Target:  5'- aCAUaGAGGCCUuccugGCACACCUcAC-CAg -3'
miRNA:   3'- gGUGaUUCCGGG-----UGUGUGGAaUGuGU- -5'
28926 3' -51.3 NC_006146.1 + 114708 0.67 0.987671
Target:  5'- uCCGCgagacccGGGCCCugGCGgCCgaguaucgGCGCAu -3'
miRNA:   3'- -GGUGau-----UCCGGGugUGU-GGaa------UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 11952 0.67 0.987671
Target:  5'- cCCaACUuccuGGCCCGCuACGCCuUUACcuGCAg -3'
miRNA:   3'- -GG-UGAuu--CCGGGUG-UGUGG-AAUG--UGU- -5'
28926 3' -51.3 NC_006146.1 + 46864 0.67 0.985875
Target:  5'- aCACUGGGGCCaugaCGCGCAauuuucuCCUggGCACc -3'
miRNA:   3'- gGUGAUUCCGG----GUGUGU-------GGAa-UGUGu -5'
28926 3' -51.3 NC_006146.1 + 110015 0.67 0.984262
Target:  5'- uCCACU-GGGCCC-CAgGCCggucUGCAgGg -3'
miRNA:   3'- -GGUGAuUCCGGGuGUgUGGa---AUGUgU- -5'
28926 3' -51.3 NC_006146.1 + 107488 0.67 0.98231
Target:  5'- gCGCUGAGGgCCGC-CACU--GCGCu -3'
miRNA:   3'- gGUGAUUCCgGGUGuGUGGaaUGUGu -5'
28926 3' -51.3 NC_006146.1 + 15653 0.67 0.98231
Target:  5'- aCGCUGAGcGCCga-GCACCU-GCACGc -3'
miRNA:   3'- gGUGAUUC-CGGgugUGUGGAaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 109592 0.67 0.98231
Target:  5'- gCCACccGGGCaggacgCCGCGCGCCgcaaACACGc -3'
miRNA:   3'- -GGUGauUCCG------GGUGUGUGGaa--UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 118624 0.67 0.98231
Target:  5'- aCCACgaugAAGGUCC--GCugCUUGCugGg -3'
miRNA:   3'- -GGUGa---UUCCGGGugUGugGAAUGugU- -5'
28926 3' -51.3 NC_006146.1 + 75181 0.67 0.98231
Target:  5'- cCCACUGggcauuuuguuAGGCCCugggaggcaGCACCgu-CACAg -3'
miRNA:   3'- -GGUGAU-----------UCCGGGug-------UGUGGaauGUGU- -5'
28926 3' -51.3 NC_006146.1 + 105077 0.67 0.98231
Target:  5'- aCCACU--GGCCCAUcagagACACag-ACACGa -3'
miRNA:   3'- -GGUGAuuCCGGGUG-----UGUGgaaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 98742 0.68 0.980182
Target:  5'- cCCGCaucucGGCCUccucCGCAUCUUGCACGc -3'
miRNA:   3'- -GGUGauu--CCGGGu---GUGUGGAAUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 18420 0.68 0.980182
Target:  5'- cUCAC-AAGGCgCACGCGCCagauguCGCAg -3'
miRNA:   3'- -GGUGaUUCCGgGUGUGUGGaau---GUGU- -5'
28926 3' -51.3 NC_006146.1 + 59889 0.68 0.978816
Target:  5'- gCCGCgcGGGCCaGCACGCUggccaaccugcuggUGCGCGg -3'
miRNA:   3'- -GGUGauUCCGGgUGUGUGGa-------------AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 40878 0.68 0.977868
Target:  5'- gUCugUAGGGCCUACaucacggaGCACCggACgACGa -3'
miRNA:   3'- -GGugAUUCCGGGUG--------UGUGGaaUG-UGU- -5'
28926 3' -51.3 NC_006146.1 + 42124 0.68 0.977868
Target:  5'- aCGCUucGGCCCuGCugGCC--ACACu -3'
miRNA:   3'- gGUGAuuCCGGG-UGugUGGaaUGUGu -5'
28926 3' -51.3 NC_006146.1 + 24627 0.68 0.977868
Target:  5'- uCCACUGGGGCC-GC-CACgUcGCGCGu -3'
miRNA:   3'- -GGUGAUUCCGGgUGuGUGgAaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 130511 0.68 0.97536
Target:  5'- cCCGCggGAGGCuaCUACGCGCCggGCGg- -3'
miRNA:   3'- -GGUGa-UUCCG--GGUGUGUGGaaUGUgu -5'
28926 3' -51.3 NC_006146.1 + 127640 0.68 0.97536
Target:  5'- cCCGCUGccucuuguccAGGCCgCGCugGCGCCgagGCACc -3'
miRNA:   3'- -GGUGAU----------UCCGG-GUG--UGUGGaa-UGUGu -5'
28926 3' -51.3 NC_006146.1 + 60904 0.68 0.97536
Target:  5'- gCC-CUGAGGcCCCACAUcccgGCCUUAguCu -3'
miRNA:   3'- -GGuGAUUCC-GGGUGUG----UGGAAUguGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.