miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28926 3' -51.3 NC_006146.1 + 5248 0.69 0.951791
Target:  5'- gCugUGGGGUCCACGgACCcaACGCc -3'
miRNA:   3'- gGugAUUCCGGGUGUgUGGaaUGUGu -5'
28926 3' -51.3 NC_006146.1 + 6991 0.75 0.734015
Target:  5'- cCCAacAAGGCCCACGCuucauCCU-GCACAa -3'
miRNA:   3'- -GGUgaUUCCGGGUGUGu----GGAaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 7107 0.69 0.963246
Target:  5'- cCCGCcAAGGCCCAgGCugCaUACu-- -3'
miRNA:   3'- -GGUGaUUCCGGGUgUGugGaAUGugu -5'
28926 3' -51.3 NC_006146.1 + 7160 1.12 0.006143
Target:  5'- cCCACUAAGGCCCACACACCUUACACAa -3'
miRNA:   3'- -GGUGAUUCCGGGUGUGUGGAAUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 7214 0.92 0.101673
Target:  5'- cCCACcAAGGCCCACGCGCCU-GCACAa -3'
miRNA:   3'- -GGUGaUUCCGGGUGUGUGGAaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 9479 0.74 0.763736
Target:  5'- cCCGC-GGGGCCaCACcCGCCUgGCACAg -3'
miRNA:   3'- -GGUGaUUCCGG-GUGuGUGGAaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 9982 0.66 0.992758
Target:  5'- cUCACgcAGG-CCACGCGCUaUAUACGg -3'
miRNA:   3'- -GGUGauUCCgGGUGUGUGGaAUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 10916 0.72 0.876514
Target:  5'- aCCACUGaaAGGCCCGCGaaaUUUugGCAu -3'
miRNA:   3'- -GGUGAU--UCCGGGUGUgugGAAugUGU- -5'
28926 3' -51.3 NC_006146.1 + 11572 0.66 0.993722
Target:  5'- gCUGCUAAGGaCCCACuACAaauaCUcugUGCACu -3'
miRNA:   3'- -GGUGAUUCC-GGGUG-UGUg---GA---AUGUGu -5'
28926 3' -51.3 NC_006146.1 + 11952 0.67 0.987671
Target:  5'- cCCaACUuccuGGCCCGCuACGCCuUUACcuGCAg -3'
miRNA:   3'- -GG-UGAuu--CCGGGUG-UGUGG-AAUG--UGU- -5'
28926 3' -51.3 NC_006146.1 + 13548 0.7 0.927823
Target:  5'- cCUGCUGcAGGCgCCGgGCGCCgggcUGCGCAa -3'
miRNA:   3'- -GGUGAU-UCCG-GGUgUGUGGa---AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 13630 0.68 0.969735
Target:  5'- aCC-CUGGGGCUgACgaucaaGCGCCggACACAg -3'
miRNA:   3'- -GGuGAUUCCGGgUG------UGUGGaaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 14676 0.66 0.99168
Target:  5'- uCCACggccgagGGGGCCCGCGucuccugcaacCACCUgGCGg- -3'
miRNA:   3'- -GGUGa------UUCCGGGUGU-----------GUGGAaUGUgu -5'
28926 3' -51.3 NC_006146.1 + 15201 0.7 0.94295
Target:  5'- cCCAC-AAGGaCCCACACGCgUc-CGCAg -3'
miRNA:   3'- -GGUGaUUCC-GGGUGUGUGgAauGUGU- -5'
28926 3' -51.3 NC_006146.1 + 15289 0.66 0.992758
Target:  5'- uUCACcuccAGGGCCCACAUcaugggaggGCUagUACACAc -3'
miRNA:   3'- -GGUGa---UUCCGGGUGUG---------UGGa-AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 15653 0.67 0.98231
Target:  5'- aCGCUGAGcGCCga-GCACCU-GCACGc -3'
miRNA:   3'- gGUGAUUC-CGGgugUGUGGAaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 18279 0.7 0.94295
Target:  5'- cCCAC-AAGGaCCCACACGCgUc-CGCAg -3'
miRNA:   3'- -GGUGaUUCC-GGGUGUGUGgAauGUGU- -5'
28926 3' -51.3 NC_006146.1 + 18367 0.66 0.992758
Target:  5'- uUCACcuccAGGGCCCACAUcaugggaggGCUagUACACAc -3'
miRNA:   3'- -GGUGa---UUCCGGGUGUG---------UGGa-AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 18420 0.68 0.980182
Target:  5'- cUCAC-AAGGCgCACGCGCCagauguCGCAg -3'
miRNA:   3'- -GGUGaUUCCGgGUGUGUGGaau---GUGU- -5'
28926 3' -51.3 NC_006146.1 + 21065 0.67 0.989145
Target:  5'- uUCGCcGAGGCCCugGcCGCCc-ACACc -3'
miRNA:   3'- -GGUGaUUCCGGGugU-GUGGaaUGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.