miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28926 3' -51.3 NC_006146.1 + 21357 0.7 0.94295
Target:  5'- cCCAC-AAGGaCCCACACGCgUc-CGCAg -3'
miRNA:   3'- -GGUGaUUCC-GGGUGUGUGgAauGUGU- -5'
28926 3' -51.3 NC_006146.1 + 21445 0.66 0.992758
Target:  5'- uUCACcuccAGGGCCCACAUcaugggaggGCUagUACACAc -3'
miRNA:   3'- -GGUGa---UUCCGGGUGUG---------UGGa-AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 23180 0.66 0.99168
Target:  5'- cCCGCUAuuacccAGGCCC-CGcCGCCUUcCugGc -3'
miRNA:   3'- -GGUGAU------UCCGGGuGU-GUGGAAuGugU- -5'
28926 3' -51.3 NC_006146.1 + 24435 0.7 0.94295
Target:  5'- cCCAC-AAGGaCCCACACGCgUc-CGCAg -3'
miRNA:   3'- -GGUGaUUCC-GGGUGUGUGgAauGUGU- -5'
28926 3' -51.3 NC_006146.1 + 24523 0.66 0.992758
Target:  5'- uUCACcuccAGGGCCCACAUcaugggaggGCUagUACACAc -3'
miRNA:   3'- -GGUGa---UUCCGGGUGUG---------UGGa-AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 24627 0.68 0.977868
Target:  5'- uCCACUGGGGCC-GC-CACgUcGCGCGu -3'
miRNA:   3'- -GGUGAUUCCGGgUGuGUGgAaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 27513 0.7 0.94295
Target:  5'- cCCAC-AAGGaCCCACACGCgUc-CGCAg -3'
miRNA:   3'- -GGUGaUUCC-GGGUGUGUGgAauGUGU- -5'
28926 3' -51.3 NC_006146.1 + 27601 0.66 0.992758
Target:  5'- uUCACcuccAGGGCCCACAUcaugggaggGCUagUACACAc -3'
miRNA:   3'- -GGUGa---UUCCGGGUGUG---------UGGa-AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 33979 0.69 0.955846
Target:  5'- uCCGCU-GGGUCCGCugGuCCggUGCACc -3'
miRNA:   3'- -GGUGAuUCCGGGUGugU-GGa-AUGUGu -5'
28926 3' -51.3 NC_006146.1 + 36692 0.66 0.992758
Target:  5'- uCCACUAAGGggggaCCAUGCAUCgaaggGCugGg -3'
miRNA:   3'- -GGUGAUUCCg----GGUGUGUGGaa---UGugU- -5'
28926 3' -51.3 NC_006146.1 + 37124 0.72 0.853371
Target:  5'- cUCugUGagggaaacAGGCCCACugACCUUACu-- -3'
miRNA:   3'- -GGugAU--------UCCGGGUGugUGGAAUGugu -5'
28926 3' -51.3 NC_006146.1 + 40118 0.7 0.938159
Target:  5'- aCGCUuuuggaGAGGCCCGCGauguCCUUGCGg- -3'
miRNA:   3'- gGUGA------UUCCGGGUGUgu--GGAAUGUgu -5'
28926 3' -51.3 NC_006146.1 + 40878 0.68 0.977868
Target:  5'- gUCugUAGGGCCUACaucacggaGCACCggACgACGa -3'
miRNA:   3'- -GGugAUUCCGGGUG--------UGUGGaaUG-UGU- -5'
28926 3' -51.3 NC_006146.1 + 41621 0.66 0.99168
Target:  5'- uCCGCU-GGGCCCGgGCGCag-AC-CAg -3'
miRNA:   3'- -GGUGAuUCCGGGUgUGUGgaaUGuGU- -5'
28926 3' -51.3 NC_006146.1 + 41769 0.72 0.883776
Target:  5'- cCCGCcgGAGGCCCuGCGC-CCggGCGCc -3'
miRNA:   3'- -GGUGa-UUCCGGG-UGUGuGGaaUGUGu -5'
28926 3' -51.3 NC_006146.1 + 42124 0.68 0.977868
Target:  5'- aCGCUucGGCCCuGCugGCC--ACACu -3'
miRNA:   3'- gGUGAuuCCGGG-UGugUGGaaUGUGu -5'
28926 3' -51.3 NC_006146.1 + 42420 0.66 0.99168
Target:  5'- cCCGCcguGGGCCCcCugGCC-UACAa- -3'
miRNA:   3'- -GGUGau-UCCGGGuGugUGGaAUGUgu -5'
28926 3' -51.3 NC_006146.1 + 42854 0.69 0.966602
Target:  5'- gCCGCc-AGGCCCACGCGCagguucCACu -3'
miRNA:   3'- -GGUGauUCCGGGUGUGUGgaau--GUGu -5'
28926 3' -51.3 NC_006146.1 + 44098 0.66 0.99458
Target:  5'- uCCACcucGGgCCGCGCGCUcgGCGCc -3'
miRNA:   3'- -GGUGauuCCgGGUGUGUGGaaUGUGu -5'
28926 3' -51.3 NC_006146.1 + 45288 0.66 0.993722
Target:  5'- gCCcCUGAGGCCCGcCAgACCaagACcCAg -3'
miRNA:   3'- -GGuGAUUCCGGGU-GUgUGGaa-UGuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.