miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28926 3' -51.3 NC_006146.1 + 46756 0.69 0.947494
Target:  5'- aCAUUGGGGCCaugcugccaaACGCGCCaccGCACAg -3'
miRNA:   3'- gGUGAUUCCGGg---------UGUGUGGaa-UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 46864 0.67 0.985875
Target:  5'- aCACUGGGGCCaugaCGCGCAauuuucuCCUggGCACc -3'
miRNA:   3'- gGUGAUUCCGG----GUGUGU-------GGAa-UGUGu -5'
28926 3' -51.3 NC_006146.1 + 47666 0.66 0.99458
Target:  5'- aCCACgcaGGGGCCCAaccuCGCCcugUAC-CAg -3'
miRNA:   3'- -GGUGa--UUCCGGGUgu--GUGGa--AUGuGU- -5'
28926 3' -51.3 NC_006146.1 + 48246 0.69 0.955846
Target:  5'- gCCGCgcggAGGGCCCcCGCcGCCguccugGCGCGa -3'
miRNA:   3'- -GGUGa---UUCCGGGuGUG-UGGaa----UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 49565 0.75 0.713717
Target:  5'- aCCACUGAGGCCCA-GCGCUgagGC-CAg -3'
miRNA:   3'- -GGUGAUUCCGGGUgUGUGGaa-UGuGU- -5'
28926 3' -51.3 NC_006146.1 + 53337 0.66 0.99458
Target:  5'- aCACgccGGCCCAUAC-CCUga-ACAg -3'
miRNA:   3'- gGUGauuCCGGGUGUGuGGAaugUGU- -5'
28926 3' -51.3 NC_006146.1 + 54777 0.69 0.955846
Target:  5'- gCGC-AGGGCCgccagggaGCGCGCCUUGgGCAg -3'
miRNA:   3'- gGUGaUUCCGGg-------UGUGUGGAAUgUGU- -5'
28926 3' -51.3 NC_006146.1 + 55704 0.66 0.993722
Target:  5'- gCCGCcggGGGGCucugcccgCCGCugGCCUccgcgUACACGc -3'
miRNA:   3'- -GGUGa--UUCCG--------GGUGugUGGA-----AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 58620 0.69 0.951791
Target:  5'- aCCACgaaAGGuGCCCGgGCAUCUU-CACGg -3'
miRNA:   3'- -GGUGa--UUC-CGGGUgUGUGGAAuGUGU- -5'
28926 3' -51.3 NC_006146.1 + 58855 0.7 0.927823
Target:  5'- aCCGCUGAGcuGCCCACccCACCUgACGgAa -3'
miRNA:   3'- -GGUGAUUC--CGGGUGu-GUGGAaUGUgU- -5'
28926 3' -51.3 NC_006146.1 + 58878 0.66 0.99458
Target:  5'- uCCugUgaagGAGGCCUGCAacgccCACUUUugGCGc -3'
miRNA:   3'- -GGugA----UUCCGGGUGU-----GUGGAAugUGU- -5'
28926 3' -51.3 NC_006146.1 + 59889 0.68 0.978816
Target:  5'- gCCGCgcGGGCCaGCACGCUggccaaccugcuggUGCGCGg -3'
miRNA:   3'- -GGUGauUCCGGgUGUGUGGa-------------AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 60734 0.72 0.853371
Target:  5'- gCGCUGAGGCCCugGacagagaucCGCCaagACACGc -3'
miRNA:   3'- gGUGAUUCCGGGugU---------GUGGaa-UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 60904 0.68 0.97536
Target:  5'- gCC-CUGAGGcCCCACAUcccgGCCUUAguCu -3'
miRNA:   3'- -GGuGAUUCC-GGGUGUG----UGGAAUguGu -5'
28926 3' -51.3 NC_006146.1 + 61977 0.74 0.773411
Target:  5'- gCCGUUGAGGCCCACGuCACCUgcucgguCGCu -3'
miRNA:   3'- -GGUGAUUCCGGGUGU-GUGGAau-----GUGu -5'
28926 3' -51.3 NC_006146.1 + 65139 0.67 0.987671
Target:  5'- aCAUaGAGGCCUuccugGCACACCUcAC-CAg -3'
miRNA:   3'- gGUGaUUCCGGG-----UGUGUGGAaUGuGU- -5'
28926 3' -51.3 NC_006146.1 + 71080 0.66 0.990479
Target:  5'- uCCACcGAGGCCCcgaACACCcccuCGCc -3'
miRNA:   3'- -GGUGaUUCCGGGug-UGUGGaau-GUGu -5'
28926 3' -51.3 NC_006146.1 + 71097 0.66 0.99458
Target:  5'- cCCAgaGAGGCCCAUugcaGCACUa-GCAUg -3'
miRNA:   3'- -GGUgaUUCCGGGUG----UGUGGaaUGUGu -5'
28926 3' -51.3 NC_006146.1 + 71543 0.66 0.990479
Target:  5'- aCGCgc-GGCCCGgGCGCCg-ACGCu -3'
miRNA:   3'- gGUGauuCCGGGUgUGUGGaaUGUGu -5'
28926 3' -51.3 NC_006146.1 + 71863 0.66 0.990479
Target:  5'- cCCGCc-GGGCCCugGgggGCCUcUACACGg -3'
miRNA:   3'- -GGUGauUCCGGGugUg--UGGA-AUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.