miRNA display CGI


Results 1 - 20 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28926 3' -51.3 NC_006146.1 + 160915 0.72 0.883776
Target:  5'- gCCACaAuuGCUCACAC-CCUUACACGc -3'
miRNA:   3'- -GGUGaUucCGGGUGUGuGGAAUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 159594 0.7 0.931555
Target:  5'- gCUGCUGAGGUCCgaguuguagaacugGCGCugCUgggGCACGc -3'
miRNA:   3'- -GGUGAUUCCGGG--------------UGUGugGAa--UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 155414 0.66 0.99168
Target:  5'- aCCACgucccCCCACACGCgCagGCACAg -3'
miRNA:   3'- -GGUGauuccGGGUGUGUG-GaaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 153941 0.67 0.989145
Target:  5'- uCCAggAAGGCCCGC-CGCUccccguuggGCACGg -3'
miRNA:   3'- -GGUgaUUCCGGGUGuGUGGaa-------UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 152033 0.66 0.990479
Target:  5'- -gGCUGAGGCCCcCGCACgUc-CACc -3'
miRNA:   3'- ggUGAUUCCGGGuGUGUGgAauGUGu -5'
28926 3' -51.3 NC_006146.1 + 151758 0.67 0.987671
Target:  5'- aCACgcuGGCCC-CGucaGCCUUGCGCc -3'
miRNA:   3'- gGUGauuCCGGGuGUg--UGGAAUGUGu -5'
28926 3' -51.3 NC_006146.1 + 146457 0.66 0.993722
Target:  5'- ------cGGUCCACACACgCggGCGCAg -3'
miRNA:   3'- ggugauuCCGGGUGUGUG-GaaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 137805 0.66 0.992758
Target:  5'- uCCGCUucgGGGGUCCGCcgguccgguGCACCUggaagGCAgGg -3'
miRNA:   3'- -GGUGA---UUCCGGGUG---------UGUGGAa----UGUgU- -5'
28926 3' -51.3 NC_006146.1 + 137360 0.67 0.989145
Target:  5'- gCACcAGGGCCagGCAaGCCggGCACAa -3'
miRNA:   3'- gGUGaUUCCGGg-UGUgUGGaaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 134132 0.66 0.99458
Target:  5'- aCAcCUAGGG-CCACcC-CCUUACGCGg -3'
miRNA:   3'- gGU-GAUUCCgGGUGuGuGGAAUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 131710 0.7 0.933117
Target:  5'- aCUACUGcGGCCUGCugauggGCACCUgagagACACGg -3'
miRNA:   3'- -GGUGAUuCCGGGUG------UGUGGAa----UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 130511 0.68 0.97536
Target:  5'- cCCGCggGAGGCuaCUACGCGCCggGCGg- -3'
miRNA:   3'- -GGUGa-UUCCG--GGUGUGUGGaaUGUgu -5'
28926 3' -51.3 NC_006146.1 + 129047 0.72 0.883776
Target:  5'- cCCGagcuGGGCCCAgACGCCg-GCGCAg -3'
miRNA:   3'- -GGUgau-UCCGGGUgUGUGGaaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 128122 0.68 0.972652
Target:  5'- -gGCcGAGGCggCCACGCGCCgccUGCACc -3'
miRNA:   3'- ggUGaUUCCG--GGUGUGUGGa--AUGUGu -5'
28926 3' -51.3 NC_006146.1 + 127640 0.68 0.97536
Target:  5'- cCCGCUGccucuuguccAGGCCgCGCugGCGCCgagGCACc -3'
miRNA:   3'- -GGUGAU----------UCCGG-GUG--UGUGGaa-UGUGu -5'
28926 3' -51.3 NC_006146.1 + 123372 0.66 0.99458
Target:  5'- gCGCUGgccggGGGCCC-CGCaACCUgGCugGa -3'
miRNA:   3'- gGUGAU-----UCCGGGuGUG-UGGAaUGugU- -5'
28926 3' -51.3 NC_006146.1 + 122559 0.69 0.949242
Target:  5'- cCCGCUGGccagacuggacgccuGGCCCAC-CACCgccaGCACc -3'
miRNA:   3'- -GGUGAUU---------------CCGGGUGuGUGGaa--UGUGu -5'
28926 3' -51.3 NC_006146.1 + 121709 0.7 0.922278
Target:  5'- cCCAUggucuccGAGGCCCuGCACACCUUcgAgACGg -3'
miRNA:   3'- -GGUGa------UUCCGGG-UGUGUGGAA--UgUGU- -5'
28926 3' -51.3 NC_006146.1 + 120002 0.69 0.947934
Target:  5'- gCACgGAGGCCCAggcCGCACCcgcggccaguccggGCACAg -3'
miRNA:   3'- gGUGaUUCCGGGU---GUGUGGaa------------UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 118921 0.66 0.992758
Target:  5'- aCGCgcccGGCCCGCAUGCCggAgACc -3'
miRNA:   3'- gGUGauu-CCGGGUGUGUGGaaUgUGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.