miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28926 3' -51.3 NC_006146.1 + 118624 0.67 0.98231
Target:  5'- aCCACgaugAAGGUCC--GCugCUUGCugGg -3'
miRNA:   3'- -GGUGa---UUCCGGGugUGugGAAUGugU- -5'
28926 3' -51.3 NC_006146.1 + 118581 0.66 0.99168
Target:  5'- gCACcccGGCCCACgucagggucaGCACCU-ACGCGc -3'
miRNA:   3'- gGUGauuCCGGGUG----------UGUGGAaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 115140 0.67 0.989145
Target:  5'- cUCGCUGccccuGGCCCGC-CGCCggGCGg- -3'
miRNA:   3'- -GGUGAUu----CCGGGUGuGUGGaaUGUgu -5'
28926 3' -51.3 NC_006146.1 + 114708 0.67 0.987671
Target:  5'- uCCGCgagacccGGGCCCugGCGgCCgaguaucgGCGCAu -3'
miRNA:   3'- -GGUGau-----UCCGGGugUGU-GGaa------UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 110015 0.67 0.984262
Target:  5'- uCCACU-GGGCCC-CAgGCCggucUGCAgGg -3'
miRNA:   3'- -GGUGAuUCCGGGuGUgUGGa---AUGUgU- -5'
28926 3' -51.3 NC_006146.1 + 109592 0.67 0.98231
Target:  5'- gCCACccGGGCaggacgCCGCGCGCCgcaaACACGc -3'
miRNA:   3'- -GGUGauUCCG------GGUGUGUGGaa--UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 107488 0.67 0.98231
Target:  5'- gCGCUGAGGgCCGC-CACU--GCGCu -3'
miRNA:   3'- gGUGAUUCCgGGUGuGUGGaaUGUGu -5'
28926 3' -51.3 NC_006146.1 + 105077 0.67 0.98231
Target:  5'- aCCACU--GGCCCAUcagagACACag-ACACGa -3'
miRNA:   3'- -GGUGAuuCCGGGUG-----UGUGgaaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 100063 0.66 0.993722
Target:  5'- cUCACUcGGGCCCGCuugGCCcUugGCc -3'
miRNA:   3'- -GGUGAuUCCGGGUGug-UGGaAugUGu -5'
28926 3' -51.3 NC_006146.1 + 98742 0.68 0.980182
Target:  5'- cCCGCaucucGGCCUccucCGCAUCUUGCACGc -3'
miRNA:   3'- -GGUGauu--CCGGGu---GUGUGGAAUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 93145 0.68 0.972652
Target:  5'- cUCGCUAGGGCCUcugcgGCACuauCCggguCACAu -3'
miRNA:   3'- -GGUGAUUCCGGG-----UGUGu--GGaau-GUGU- -5'
28926 3' -51.3 NC_006146.1 + 90863 0.66 0.99168
Target:  5'- aCCGCUGucuGGCCgccaucauaaaGCACACCaUUugACGu -3'
miRNA:   3'- -GGUGAUu--CCGGg----------UGUGUGG-AAugUGU- -5'
28926 3' -51.3 NC_006146.1 + 88992 0.66 0.993722
Target:  5'- -gGCUGAGGCuCCcCAUAUgUUugGCAc -3'
miRNA:   3'- ggUGAUUCCG-GGuGUGUGgAAugUGU- -5'
28926 3' -51.3 NC_006146.1 + 86830 0.66 0.990351
Target:  5'- cUCGCccguGGGCCUugGCaucauuuauaaauGCCUUGCAUAu -3'
miRNA:   3'- -GGUGau--UCCGGGugUG-------------UGGAAUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 86533 0.66 0.993722
Target:  5'- gCCGCcc-GGUCCACgccuaGCACCUUGCu-- -3'
miRNA:   3'- -GGUGauuCCGGGUG-----UGUGGAAUGugu -5'
28926 3' -51.3 NC_006146.1 + 79068 0.71 0.910432
Target:  5'- uCCACc--GGCCaGCACACCUUcuuCACAa -3'
miRNA:   3'- -GGUGauuCCGGgUGUGUGGAAu--GUGU- -5'
28926 3' -51.3 NC_006146.1 + 78811 0.69 0.951791
Target:  5'- cCCuggGAGGCCCACGCGuCCagGCAg- -3'
miRNA:   3'- -GGugaUUCCGGGUGUGU-GGaaUGUgu -5'
28926 3' -51.3 NC_006146.1 + 75181 0.67 0.98231
Target:  5'- cCCACUGggcauuuuguuAGGCCCugggaggcaGCACCgu-CACAg -3'
miRNA:   3'- -GGUGAU-----------UCCGGGug-------UGUGGaauGUGU- -5'
28926 3' -51.3 NC_006146.1 + 71863 0.66 0.990479
Target:  5'- cCCGCc-GGGCCCugGgggGCCUcUACACGg -3'
miRNA:   3'- -GGUGauUCCGGGugUg--UGGA-AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 71543 0.66 0.990479
Target:  5'- aCGCgc-GGCCCGgGCGCCg-ACGCu -3'
miRNA:   3'- gGUGauuCCGGGUgUGUGGaaUGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.