miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28926 3' -51.3 NC_006146.1 + 9479 0.74 0.763736
Target:  5'- cCCGC-GGGGCCaCACcCGCCUgGCACAg -3'
miRNA:   3'- -GGUGaUUCCGG-GUGuGUGGAaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 128122 0.68 0.972652
Target:  5'- -gGCcGAGGCggCCACGCGCCgccUGCACc -3'
miRNA:   3'- ggUGaUUCCG--GGUGUGUGGa--AUGUGu -5'
28926 3' -51.3 NC_006146.1 + 40878 0.68 0.977868
Target:  5'- gUCugUAGGGCCUACaucacggaGCACCggACgACGa -3'
miRNA:   3'- -GGugAUUCCGGGUG--------UGUGGaaUG-UGU- -5'
28926 3' -51.3 NC_006146.1 + 71097 0.66 0.99458
Target:  5'- cCCAgaGAGGCCCAUugcaGCACUa-GCAUg -3'
miRNA:   3'- -GGUgaUUCCGGGUG----UGUGGaaUGUGu -5'
28926 3' -51.3 NC_006146.1 + 79068 0.71 0.910432
Target:  5'- uCCACc--GGCCaGCACACCUUcuuCACAa -3'
miRNA:   3'- -GGUGauuCCGGgUGUGUGGAAu--GUGU- -5'
28926 3' -51.3 NC_006146.1 + 159594 0.7 0.931555
Target:  5'- gCUGCUGAGGUCCgaguuguagaacugGCGCugCUgggGCACGc -3'
miRNA:   3'- -GGUGAUUCCGGG--------------UGUGugGAa--UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 18279 0.7 0.94295
Target:  5'- cCCAC-AAGGaCCCACACGCgUc-CGCAg -3'
miRNA:   3'- -GGUGaUUCC-GGGUGUGUGgAauGUGU- -5'
28926 3' -51.3 NC_006146.1 + 21357 0.7 0.94295
Target:  5'- cCCAC-AAGGaCCCACACGCgUc-CGCAg -3'
miRNA:   3'- -GGUGaUUCC-GGGUGUGUGgAauGUGU- -5'
28926 3' -51.3 NC_006146.1 + 120002 0.69 0.947934
Target:  5'- gCACgGAGGCCCAggcCGCACCcgcggccaguccggGCACAg -3'
miRNA:   3'- gGUGaUUCCGGGU---GUGUGGaa------------UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 54777 0.69 0.955846
Target:  5'- gCGC-AGGGCCgccagggaGCGCGCCUUGgGCAg -3'
miRNA:   3'- gGUGaUUCCGGg-------UGUGUGGAAUgUGU- -5'
28926 3' -51.3 NC_006146.1 + 58620 0.69 0.951791
Target:  5'- aCCACgaaAGGuGCCCGgGCAUCUU-CACGg -3'
miRNA:   3'- -GGUGa--UUC-CGGGUgUGUGGAAuGUGU- -5'
28926 3' -51.3 NC_006146.1 + 27513 0.7 0.94295
Target:  5'- cCCAC-AAGGaCCCACACGCgUc-CGCAg -3'
miRNA:   3'- -GGUGaUUCC-GGGUGUGUGgAauGUGU- -5'
28926 3' -51.3 NC_006146.1 + 61977 0.74 0.773411
Target:  5'- gCCGUUGAGGCCCACGuCACCUgcucgguCGCu -3'
miRNA:   3'- -GGUGAUUCCGGGUGU-GUGGAau-----GUGu -5'
28926 3' -51.3 NC_006146.1 + 33979 0.69 0.955846
Target:  5'- uCCGCU-GGGUCCGCugGuCCggUGCACc -3'
miRNA:   3'- -GGUGAuUCCGGGUGugU-GGa-AUGUGu -5'
28926 3' -51.3 NC_006146.1 + 10916 0.72 0.876514
Target:  5'- aCCACUGaaAGGCCCGCGaaaUUUugGCAu -3'
miRNA:   3'- -GGUGAU--UCCGGGUGUgugGAAugUGU- -5'
28926 3' -51.3 NC_006146.1 + 24435 0.7 0.94295
Target:  5'- cCCAC-AAGGaCCCACACGCgUc-CGCAg -3'
miRNA:   3'- -GGUGaUUCC-GGGUGUGUGgAauGUGU- -5'
28926 3' -51.3 NC_006146.1 + 48246 0.69 0.955846
Target:  5'- gCCGCgcggAGGGCCCcCGCcGCCguccugGCGCGa -3'
miRNA:   3'- -GGUGa---UUCCGGGuGUG-UGGaa----UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 130511 0.68 0.97536
Target:  5'- cCCGCggGAGGCuaCUACGCGCCggGCGg- -3'
miRNA:   3'- -GGUGa-UUCCG--GGUGUGUGGaaUGUgu -5'
28926 3' -51.3 NC_006146.1 + 129047 0.72 0.883776
Target:  5'- cCCGagcuGGGCCCAgACGCCg-GCGCAg -3'
miRNA:   3'- -GGUgau-UCCGGGUgUGUGGaaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 15201 0.7 0.94295
Target:  5'- cCCAC-AAGGaCCCACACGCgUc-CGCAg -3'
miRNA:   3'- -GGUGaUUCC-GGGUGUGUGgAauGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.