miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28926 3' -51.3 NC_006146.1 + 98742 0.68 0.980182
Target:  5'- cCCGCaucucGGCCUccucCGCAUCUUGCACGc -3'
miRNA:   3'- -GGUGauu--CCGGGu---GUGUGGAAUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 40878 0.68 0.977868
Target:  5'- gUCugUAGGGCCUACaucacggaGCACCggACgACGa -3'
miRNA:   3'- -GGugAUUCCGGGUG--------UGUGGaaUG-UGU- -5'
28926 3' -51.3 NC_006146.1 + 27513 0.7 0.94295
Target:  5'- cCCAC-AAGGaCCCACACGCgUc-CGCAg -3'
miRNA:   3'- -GGUGaUUCC-GGGUGUGUGgAauGUGU- -5'
28926 3' -51.3 NC_006146.1 + 129047 0.72 0.883776
Target:  5'- cCCGagcuGGGCCCAgACGCCg-GCGCAg -3'
miRNA:   3'- -GGUgau-UCCGGGUgUGUGGaaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 18367 0.66 0.992758
Target:  5'- uUCACcuccAGGGCCCACAUcaugggaggGCUagUACACAc -3'
miRNA:   3'- -GGUGa---UUCCGGGUGUG---------UGGa-AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 153941 0.67 0.989145
Target:  5'- uCCAggAAGGCCCGC-CGCUccccguuggGCACGg -3'
miRNA:   3'- -GGUgaUUCCGGGUGuGUGGaa-------UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 128122 0.68 0.972652
Target:  5'- -gGCcGAGGCggCCACGCGCCgccUGCACc -3'
miRNA:   3'- ggUGaUUCCG--GGUGUGUGGa--AUGUGu -5'
28926 3' -51.3 NC_006146.1 + 10916 0.72 0.876514
Target:  5'- aCCACUGaaAGGCCCGCGaaaUUUugGCAu -3'
miRNA:   3'- -GGUGAU--UCCGGGUGUgugGAAugUGU- -5'
28926 3' -51.3 NC_006146.1 + 151758 0.67 0.987671
Target:  5'- aCACgcuGGCCC-CGucaGCCUUGCGCc -3'
miRNA:   3'- gGUGauuCCGGGuGUg--UGGAAUGUGu -5'
28926 3' -51.3 NC_006146.1 + 61977 0.74 0.773411
Target:  5'- gCCGUUGAGGCCCACGuCACCUgcucgguCGCu -3'
miRNA:   3'- -GGUGAUUCCGGGUGU-GUGGAau-----GUGu -5'
28926 3' -51.3 NC_006146.1 + 130511 0.68 0.97536
Target:  5'- cCCGCggGAGGCuaCUACGCGCCggGCGg- -3'
miRNA:   3'- -GGUGa-UUCCG--GGUGUGUGGaaUGUgu -5'
28926 3' -51.3 NC_006146.1 + 109592 0.67 0.98231
Target:  5'- gCCACccGGGCaggacgCCGCGCGCCgcaaACACGc -3'
miRNA:   3'- -GGUGauUCCG------GGUGUGUGGaa--UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 33979 0.69 0.955846
Target:  5'- uCCGCU-GGGUCCGCugGuCCggUGCACc -3'
miRNA:   3'- -GGUGAuUCCGGGUGugU-GGa-AUGUGu -5'
28926 3' -51.3 NC_006146.1 + 120002 0.69 0.947934
Target:  5'- gCACgGAGGCCCAggcCGCACCcgcggccaguccggGCACAg -3'
miRNA:   3'- gGUGaUUCCGGGU---GUGUGGaa------------UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 18279 0.7 0.94295
Target:  5'- cCCAC-AAGGaCCCACACGCgUc-CGCAg -3'
miRNA:   3'- -GGUGaUUCC-GGGUGUGUGgAauGUGU- -5'
28926 3' -51.3 NC_006146.1 + 79068 0.71 0.910432
Target:  5'- uCCACc--GGCCaGCACACCUUcuuCACAa -3'
miRNA:   3'- -GGUGauuCCGGgUGUGUGGAAu--GUGU- -5'
28926 3' -51.3 NC_006146.1 + 137805 0.66 0.992758
Target:  5'- uCCGCUucgGGGGUCCGCcgguccgguGCACCUggaagGCAgGg -3'
miRNA:   3'- -GGUGA---UUCCGGGUG---------UGUGGAa----UGUgU- -5'
28926 3' -51.3 NC_006146.1 + 21445 0.66 0.992758
Target:  5'- uUCACcuccAGGGCCCACAUcaugggaggGCUagUACACAc -3'
miRNA:   3'- -GGUGa---UUCCGGGUGUG---------UGGa-AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 155414 0.66 0.99168
Target:  5'- aCCACgucccCCCACACGCgCagGCACAg -3'
miRNA:   3'- -GGUGauuccGGGUGUGUG-GaaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 86830 0.66 0.990351
Target:  5'- cUCGCccguGGGCCUugGCaucauuuauaaauGCCUUGCAUAu -3'
miRNA:   3'- -GGUGau--UCCGGGugUG-------------UGGAAUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.