miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28926 3' -51.3 NC_006146.1 + 24523 0.66 0.992758
Target:  5'- uUCACcuccAGGGCCCACAUcaugggaggGCUagUACACAc -3'
miRNA:   3'- -GGUGa---UUCCGGGUGUG---------UGGa-AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 11572 0.66 0.993722
Target:  5'- gCUGCUAAGGaCCCACuACAaauaCUcugUGCACu -3'
miRNA:   3'- -GGUGAUUCC-GGGUG-UGUg---GA---AUGUGu -5'
28926 3' -51.3 NC_006146.1 + 58878 0.66 0.99458
Target:  5'- uCCugUgaagGAGGCCUGCAacgccCACUUUugGCGc -3'
miRNA:   3'- -GGugA----UUCCGGGUGU-----GUGGAAugUGU- -5'
28926 3' -51.3 NC_006146.1 + 120002 0.69 0.947934
Target:  5'- gCACgGAGGCCCAggcCGCACCcgcggccaguccggGCACAg -3'
miRNA:   3'- gGUGaUUCCGGGU---GUGUGGaa------------UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 153941 0.67 0.989145
Target:  5'- uCCAggAAGGCCCGC-CGCUccccguuggGCACGg -3'
miRNA:   3'- -GGUgaUUCCGGGUGuGUGGaa-------UGUGU- -5'
28926 3' -51.3 NC_006146.1 + 5248 0.69 0.951791
Target:  5'- gCugUGGGGUCCACGgACCcaACGCc -3'
miRNA:   3'- gGugAUUCCGGGUGUgUGGaaUGUGu -5'
28926 3' -51.3 NC_006146.1 + 146457 0.66 0.993722
Target:  5'- ------cGGUCCACACACgCggGCGCAg -3'
miRNA:   3'- ggugauuCCGGGUGUGUG-GaaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 118921 0.66 0.992758
Target:  5'- aCGCgcccGGCCCGCAUGCCggAgACc -3'
miRNA:   3'- gGUGauu-CCGGGUGUGUGGaaUgUGu -5'
28926 3' -51.3 NC_006146.1 + 7160 1.12 0.006143
Target:  5'- cCCACUAAGGCCCACACACCUUACACAa -3'
miRNA:   3'- -GGUGAUUCCGGGUGUGUGGAAUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 7214 0.92 0.101673
Target:  5'- cCCACcAAGGCCCACGCGCCU-GCACAa -3'
miRNA:   3'- -GGUGaUUCCGGGUGUGUGGAaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 49565 0.75 0.713717
Target:  5'- aCCACUGAGGCCCA-GCGCUgagGC-CAg -3'
miRNA:   3'- -GGUGAUUCCGGGUgUGUGGaa-UGuGU- -5'
28926 3' -51.3 NC_006146.1 + 24627 0.68 0.977868
Target:  5'- uCCACUGGGGCC-GC-CACgUcGCGCGu -3'
miRNA:   3'- -GGUGAUUCCGGgUGuGUGgAaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 127640 0.68 0.97536
Target:  5'- cCCGCUGccucuuguccAGGCCgCGCugGCGCCgagGCACc -3'
miRNA:   3'- -GGUGAU----------UCCGG-GUG--UGUGGaa-UGUGu -5'
28926 3' -51.3 NC_006146.1 + 15653 0.67 0.98231
Target:  5'- aCGCUGAGcGCCga-GCACCU-GCACGc -3'
miRNA:   3'- gGUGAUUC-CGGgugUGUGGAaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 105077 0.67 0.98231
Target:  5'- aCCACU--GGCCCAUcagagACACag-ACACGa -3'
miRNA:   3'- -GGUGAuuCCGGGUG-----UGUGgaaUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 107488 0.67 0.98231
Target:  5'- gCGCUGAGGgCCGC-CACU--GCGCu -3'
miRNA:   3'- gGUGAUUCCgGGUGuGUGGaaUGUGu -5'
28926 3' -51.3 NC_006146.1 + 60904 0.68 0.97536
Target:  5'- gCC-CUGAGGcCCCACAUcccgGCCUUAguCu -3'
miRNA:   3'- -GGuGAUUCC-GGGUGUG----UGGAAUguGu -5'
28926 3' -51.3 NC_006146.1 + 71543 0.66 0.990479
Target:  5'- aCGCgc-GGCCCGgGCGCCg-ACGCu -3'
miRNA:   3'- gGUGauuCCGGGUgUGUGGaaUGUGu -5'
28926 3' -51.3 NC_006146.1 + 71863 0.66 0.990479
Target:  5'- cCCGCc-GGGCCCugGgggGCCUcUACACGg -3'
miRNA:   3'- -GGUGauUCCGGGugUg--UGGA-AUGUGU- -5'
28926 3' -51.3 NC_006146.1 + 14676 0.66 0.99168
Target:  5'- uCCACggccgagGGGGCCCGCGucuccugcaacCACCUgGCGg- -3'
miRNA:   3'- -GGUGa------UUCCGGGUGU-----------GUGGAaUGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.