Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28926 | 3' | -51.3 | NC_006146.1 | + | 65139 | 0.67 | 0.987671 |
Target: 5'- aCAUaGAGGCCUuccugGCACACCUcAC-CAg -3' miRNA: 3'- gGUGaUUCCGGG-----UGUGUGGAaUGuGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 14676 | 0.66 | 0.99168 |
Target: 5'- uCCACggccgagGGGGCCCGCGucuccugcaacCACCUgGCGg- -3' miRNA: 3'- -GGUGa------UUCCGGGUGU-----------GUGGAaUGUgu -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 71863 | 0.66 | 0.990479 |
Target: 5'- cCCGCc-GGGCCCugGgggGCCUcUACACGg -3' miRNA: 3'- -GGUGauUCCGGGugUg--UGGA-AUGUGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 71543 | 0.66 | 0.990479 |
Target: 5'- aCGCgc-GGCCCGgGCGCCg-ACGCu -3' miRNA: 3'- gGUGauuCCGGGUgUGUGGaaUGUGu -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 71080 | 0.66 | 0.990479 |
Target: 5'- uCCACcGAGGCCCcgaACACCcccuCGCc -3' miRNA: 3'- -GGUGaUUCCGGGug-UGUGGaau-GUGu -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 137360 | 0.67 | 0.989145 |
Target: 5'- gCACcAGGGCCagGCAaGCCggGCACAa -3' miRNA: 3'- gGUGaUUCCGGg-UGUgUGGaaUGUGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 115140 | 0.67 | 0.989145 |
Target: 5'- cUCGCUGccccuGGCCCGC-CGCCggGCGg- -3' miRNA: 3'- -GGUGAUu----CCGGGUGuGUGGaaUGUgu -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 21065 | 0.67 | 0.989145 |
Target: 5'- uUCGCcGAGGCCCugGcCGCCc-ACACc -3' miRNA: 3'- -GGUGaUUCCGGGugU-GUGGaaUGUGu -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 114708 | 0.67 | 0.987671 |
Target: 5'- uCCGCgagacccGGGCCCugGCGgCCgaguaucgGCGCAu -3' miRNA: 3'- -GGUGau-----UCCGGGugUGU-GGaa------UGUGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 23180 | 0.66 | 0.99168 |
Target: 5'- cCCGCUAuuacccAGGCCC-CGcCGCCUUcCugGc -3' miRNA: 3'- -GGUGAU------UCCGGGuGU-GUGGAAuGugU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 90863 | 0.66 | 0.99168 |
Target: 5'- aCCGCUGucuGGCCgccaucauaaaGCACACCaUUugACGu -3' miRNA: 3'- -GGUGAUu--CCGGg----------UGUGUGG-AAugUGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 118581 | 0.66 | 0.99168 |
Target: 5'- gCACcccGGCCCACgucagggucaGCACCU-ACGCGc -3' miRNA: 3'- gGUGauuCCGGGUG----------UGUGGAaUGUGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 53337 | 0.66 | 0.99458 |
Target: 5'- aCACgccGGCCCAUAC-CCUga-ACAg -3' miRNA: 3'- gGUGauuCCGGGUGUGuGGAaugUGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 47666 | 0.66 | 0.99458 |
Target: 5'- aCCACgcaGGGGCCCAaccuCGCCcugUAC-CAg -3' miRNA: 3'- -GGUGa--UUCCGGGUgu--GUGGa--AUGuGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 100063 | 0.66 | 0.993722 |
Target: 5'- cUCACUcGGGCCCGCuugGCCcUugGCc -3' miRNA: 3'- -GGUGAuUCCGGGUGug-UGGaAugUGu -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 88992 | 0.66 | 0.993722 |
Target: 5'- -gGCUGAGGCuCCcCAUAUgUUugGCAc -3' miRNA: 3'- ggUGAUUCCG-GGuGUGUGgAAugUGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 45288 | 0.66 | 0.993722 |
Target: 5'- gCCcCUGAGGCCCGcCAgACCaagACcCAg -3' miRNA: 3'- -GGuGAUUCCGGGU-GUgUGGaa-UGuGU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 118921 | 0.66 | 0.992758 |
Target: 5'- aCGCgcccGGCCCGCAUGCCggAgACc -3' miRNA: 3'- gGUGauu-CCGGGUGUGUGGaaUgUGu -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 36692 | 0.66 | 0.992758 |
Target: 5'- uCCACUAAGGggggaCCAUGCAUCgaaggGCugGg -3' miRNA: 3'- -GGUGAUUCCg----GGUGUGUGGaa---UGugU- -5' |
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28926 | 3' | -51.3 | NC_006146.1 | + | 9982 | 0.66 | 0.992758 |
Target: 5'- cUCACgcAGG-CCACGCGCUaUAUACGg -3' miRNA: 3'- -GGUGauUCCgGGUGUGUGGaAUGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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