Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28926 | 5' | -56.2 | NC_006146.1 | + | 137078 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 135313 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 135963 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 135406 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 135499 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 136056 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 136799 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 55481 | 0.66 | 0.92376 |
Target: 5'- cGCggGCGAGAacgaGGCCCgGCCGc- -3' miRNA: 3'- cCGuaCGCUCUaca-CCGGGgUGGUuc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 135777 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 135220 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 135592 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 135870 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 136614 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 136985 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 136521 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 136892 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 136335 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 136428 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 136242 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 135685 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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