miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28926 5' -56.2 NC_006146.1 + 7196 1.12 0.001984
Target:  5'- aGGCAUGCGAGAUGUGGCCCCACCAAGg -3'
miRNA:   3'- -CCGUACGCUCUACACCGGGGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 7142 0.76 0.403736
Target:  5'- uGGCcUGCuAGAauUGGCCCCACUAAGg -3'
miRNA:   3'- -CCGuACGcUCUacACCGGGGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 161417 0.74 0.493398
Target:  5'- aGGCcUGUGccaggcGGGUGUGGCCCCGcgggaacCCAAGg -3'
miRNA:   3'- -CCGuACGC------UCUACACCGGGGU-------GGUUC- -5'
28926 5' -56.2 NC_006146.1 + 24030 0.73 0.552946
Target:  5'- aGGCGUcgucccccugGCGGGGUGacgcGGCCCCgaGCCAGGc -3'
miRNA:   3'- -CCGUA----------CGCUCUACa---CCGGGG--UGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 130305 0.72 0.623618
Target:  5'- cGGCAUGCgGAGGUucGGCCgCCcaggGCCAGGa -3'
miRNA:   3'- -CCGUACG-CUCUAcaCCGG-GG----UGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 6973 0.71 0.643975
Target:  5'- uGGCAUGCGAaaa-UGGCCCCcaaCAAGg -3'
miRNA:   3'- -CCGUACGCUcuacACCGGGGug-GUUC- -5'
28926 5' -56.2 NC_006146.1 + 19973 0.71 0.654144
Target:  5'- gGGCGucUGCGAGGUcaggaGGCCCCacgacGCCGGGa -3'
miRNA:   3'- -CCGU--ACGCUCUAca---CCGGGG-----UGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 168224 0.7 0.704558
Target:  5'- uGGCcgGCGGGAgg-GGCCggcgCCugCAGGg -3'
miRNA:   3'- -CCGuaCGCUCUacaCCGG----GGugGUUC- -5'
28926 5' -56.2 NC_006146.1 + 169156 0.7 0.704558
Target:  5'- uGGCcgGCGGGAgg-GGCCggcgCCugCAGGg -3'
miRNA:   3'- -CCGuaCGCUCUacaCCGG----GGugGUUC- -5'
28926 5' -56.2 NC_006146.1 + 167292 0.7 0.704558
Target:  5'- uGGCcgGCGGGAgg-GGCCggcgCCugCAGGg -3'
miRNA:   3'- -CCGuaCGCUCUacaCCGG----GGugGUUC- -5'
28926 5' -56.2 NC_006146.1 + 69065 0.7 0.714494
Target:  5'- cGGCAgccCGAGcgcucgGGCCCCGCCGAa -3'
miRNA:   3'- -CCGUac-GCUCuaca--CCGGGGUGGUUc -5'
28926 5' -56.2 NC_006146.1 + 160430 0.7 0.724361
Target:  5'- aGGUA-GUGGGcgGUGGcCCCCAUCAc- -3'
miRNA:   3'- -CCGUaCGCUCuaCACC-GGGGUGGUuc -5'
28926 5' -56.2 NC_006146.1 + 137993 0.7 0.73415
Target:  5'- cGGCGggGUGGGggGUGcGCCCCcaGCCGGa -3'
miRNA:   3'- -CCGUa-CGCUCuaCAC-CGGGG--UGGUUc -5'
28926 5' -56.2 NC_006146.1 + 166027 0.69 0.762953
Target:  5'- gGGCAU-CGGGGgugccUGUGGcCCCCGCCc-- -3'
miRNA:   3'- -CCGUAcGCUCU-----ACACC-GGGGUGGuuc -5'
28926 5' -56.2 NC_006146.1 + 10517 0.69 0.781597
Target:  5'- uGGUuUGCGAGAcUG-GGCggCCUGCCAAGg -3'
miRNA:   3'- -CCGuACGCUCU-ACaCCG--GGGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 44076 0.69 0.781597
Target:  5'- uGCAUGcCGGGAcugggGUGGUUCCACCucGGg -3'
miRNA:   3'- cCGUAC-GCUCUa----CACCGGGGUGGu-UC- -5'
28926 5' -56.2 NC_006146.1 + 34162 0.69 0.79971
Target:  5'- cGGCGaggGUGGGggGUGcGCCCCcaGCCGGa -3'
miRNA:   3'- -CCGUa--CGCUCuaCAC-CGGGG--UGGUUc -5'
28926 5' -56.2 NC_006146.1 + 33271 0.69 0.79971
Target:  5'- cGCuccggGUGGGggGUGGCCCgGCUggGc -3'
miRNA:   3'- cCGua---CGCUCuaCACCGGGgUGGuuC- -5'
28926 5' -56.2 NC_006146.1 + 33147 0.69 0.79971
Target:  5'- cGCuccggGUGGGggGUGGCCCgGCUggGc -3'
miRNA:   3'- cCGua---CGCUCuaCACCGGGgUGGuuC- -5'
28926 5' -56.2 NC_006146.1 + 34028 0.68 0.807669
Target:  5'- gGGCAgGCGGGc-GUGGUCCCggggccuaugccgGCCGGGg -3'
miRNA:   3'- -CCGUaCGCUCuaCACCGGGG-------------UGGUUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.