Results 21 - 40 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28926 | 5' | -56.2 | NC_006146.1 | + | 123230 | 0.68 | 0.808545 |
Target: 5'- uGGUAcaggGCGAGGUugGGCCCCugCGu- -3' miRNA: 3'- -CCGUa---CGCUCUAcaCCGGGGugGUuc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 167076 | 0.68 | 0.808545 |
Target: 5'- gGGCA-GCGGGG-GU-GCCCCGCCuGGc -3' miRNA: 3'- -CCGUaCGCUCUaCAcCGGGGUGGuUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 72198 | 0.68 | 0.817223 |
Target: 5'- cGGCGgccggauggGCGGGAgaccaGcGGCCCCACCc-- -3' miRNA: 3'- -CCGUa--------CGCUCUa----CaCCGGGGUGGuuc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 100709 | 0.68 | 0.817223 |
Target: 5'- cGGCGcUGCGGGGguggGUgugggaccGGCCUCGCCGGc -3' miRNA: 3'- -CCGU-ACGCUCUa---CA--------CCGGGGUGGUUc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 137648 | 0.68 | 0.817223 |
Target: 5'- aGGCAaGCGGGuucGUGGagcCCCCACCc-- -3' miRNA: 3'- -CCGUaCGCUCua-CACC---GGGGUGGuuc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 143395 | 0.68 | 0.825734 |
Target: 5'- cGCGUGUGGGuccuUGUGGguCUCCGCCGGu -3' miRNA: 3'- cCGUACGCUCu---ACACC--GGGGUGGUUc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 152629 | 0.68 | 0.825734 |
Target: 5'- cGCGUGUGGGuccuUGUGGguCUCCGCCGGu -3' miRNA: 3'- cCGUACGCUCu---ACACC--GGGGUGGUUc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 146473 | 0.68 | 0.825734 |
Target: 5'- cGCGUGUGGGuccuUGUGGguCUCCGCCGGu -3' miRNA: 3'- cCGUACGCUCu---ACACC--GGGGUGGUUc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 149551 | 0.68 | 0.825734 |
Target: 5'- cGCGUGUGGGuccuUGUGGguCUCCGCCGGu -3' miRNA: 3'- cCGUACGCUCu---ACACC--GGGGUGGUUc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 155706 | 0.68 | 0.825734 |
Target: 5'- cGCGUGUGGGuccuUGUGGguCUCCGCCGGu -3' miRNA: 3'- cCGUACGCUCu---ACACC--GGGGUGGUUc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 52098 | 0.68 | 0.827416 |
Target: 5'- gGGCcgGCGAGgccAucuguuccccgucgcUGgacaccagcucgGGCCCCACCAGGu -3' miRNA: 3'- -CCGuaCGCUC---U---------------ACa-----------CCGGGGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 137856 | 0.67 | 0.865533 |
Target: 5'- gGGUggGUGGGcGUGUcccgGGCCCCGCCc-- -3' miRNA: 3'- -CCGuaCGCUC-UACA----CCGGGGUGGuuc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 7034 | 0.67 | 0.865533 |
Target: 5'- uGGCAUGCuGGAauUGGCCCgGCaAAGc -3' miRNA: 3'- -CCGUACGcUCUacACCGGGgUGgUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 81816 | 0.67 | 0.872894 |
Target: 5'- cGGuCAUGagGAGccGUGGCCCaaCACCAGc -3' miRNA: 3'- -CC-GUACg-CUCuaCACCGGG--GUGGUUc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 53764 | 0.67 | 0.880042 |
Target: 5'- gGGCG-GCGGGcgGaGGUCUCGCCGGa -3' miRNA: 3'- -CCGUaCGCUCuaCaCCGGGGUGGUUc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 55027 | 0.67 | 0.880042 |
Target: 5'- gGGCggGCGGGAUGggGGUCgggGCCGGGg -3' miRNA: 3'- -CCGuaCGCUCUACa-CCGGgg-UGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 43635 | 0.67 | 0.880042 |
Target: 5'- gGGCG-GCGGGgcGUGGCCgC-CUggGg -3' miRNA: 3'- -CCGUaCGCUCuaCACCGGgGuGGuuC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 114701 | 0.67 | 0.880042 |
Target: 5'- cGGCucguccGCGAGAcccgGGCCCUggcgGCCGAGu -3' miRNA: 3'- -CCGua----CGCUCUaca-CCGGGG----UGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 6645 | 0.67 | 0.886971 |
Target: 5'- aGCAa-CGAGGgagGUGGCCC-ACCAGGc -3' miRNA: 3'- cCGUacGCUCUa--CACCGGGgUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 47245 | 0.67 | 0.886971 |
Target: 5'- uGGC--GCGGGucgacGUGGCCCCuggcCCGGGu -3' miRNA: 3'- -CCGuaCGCUCua---CACCGGGGu---GGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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