miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28926 5' -56.2 NC_006146.1 + 137450 0.66 0.92376
Target:  5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3'
miRNA:   3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 137171 0.66 0.92376
Target:  5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3'
miRNA:   3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 137264 0.66 0.92376
Target:  5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3'
miRNA:   3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 136614 0.66 0.92376
Target:  5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3'
miRNA:   3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 136428 0.66 0.92376
Target:  5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3'
miRNA:   3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 136335 0.66 0.92376
Target:  5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3'
miRNA:   3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 135406 0.66 0.92376
Target:  5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3'
miRNA:   3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 146707 0.66 0.912427
Target:  5'- aGCcgGCGAuGAcgguggagGUGGCCCCggGCgCAGGg -3'
miRNA:   3'- cCGuaCGCU-CUa-------CACCGGGG--UG-GUUC- -5'
28926 5' -56.2 NC_006146.1 + 143630 0.66 0.912427
Target:  5'- aGCcgGCGAuGAcgguggagGUGGCCCCggGCgCAGGg -3'
miRNA:   3'- cCGuaCGCU-CUa-------CACCGGGG--UG-GUUC- -5'
28926 5' -56.2 NC_006146.1 + 155941 0.66 0.912427
Target:  5'- aGCcgGCGAuGAcgguggagGUGGCCCCggGCgCAGGg -3'
miRNA:   3'- cCGuaCGCU-CUa-------CACCGGGG--UG-GUUC- -5'
28926 5' -56.2 NC_006146.1 + 69604 0.66 0.912427
Target:  5'- gGGCA-GCGAGAcGUccaGGCCCaCGuccCCGGGg -3'
miRNA:   3'- -CCGUaCGCUCUaCA---CCGGG-GU---GGUUC- -5'
28926 5' -56.2 NC_006146.1 + 152863 0.66 0.912427
Target:  5'- aGCcgGCGAuGAcgguggagGUGGCCCCggGCgCAGGg -3'
miRNA:   3'- cCGuaCGCU-CUa-------CACCGGGG--UG-GUUC- -5'
28926 5' -56.2 NC_006146.1 + 57375 0.66 0.912427
Target:  5'- cGGCGgugGCGccGGUGggcUGGCCCCGCg--- -3'
miRNA:   3'- -CCGUa--CGCu-CUAC---ACCGGGGUGguuc -5'
28926 5' -56.2 NC_006146.1 + 149785 0.66 0.912427
Target:  5'- aGCcgGCGAuGAcgguggagGUGGCCCCggGCgCAGGg -3'
miRNA:   3'- cCGuaCGCU-CUa-------CACCGGGG--UG-GUUC- -5'
28926 5' -56.2 NC_006146.1 + 15057 0.66 0.906409
Target:  5'- gGGCcUGCGAGGaggcacUGgcgggGGCUCCGCUGAc -3'
miRNA:   3'- -CCGuACGCUCU------ACa----CCGGGGUGGUUc -5'
28926 5' -56.2 NC_006146.1 + 7090 0.66 0.906409
Target:  5'- aGGCAUGCuaaaauUGGCCC-GCCAAGg -3'
miRNA:   3'- -CCGUACGcucuacACCGGGgUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 76443 0.66 0.906409
Target:  5'- cGGUggaGUGCGAGGUGUuccucGaGCCCCuugcCCAGu -3'
miRNA:   3'- -CCG---UACGCUCUACA-----C-CGGGGu---GGUUc -5'
28926 5' -56.2 NC_006146.1 + 127235 0.66 0.900158
Target:  5'- gGGCcuggagcgaAUGCGAGccG-GGCCCCucuccCCAGGc -3'
miRNA:   3'- -CCG---------UACGCUCuaCaCCGGGGu----GGUUC- -5'
28926 5' -56.2 NC_006146.1 + 136707 0.66 0.900158
Target:  5'- cGCuccgGCGGGggGUGGCCggccgCUGCCGGGu -3'
miRNA:   3'- cCGua--CGCUCuaCACCGG-----GGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 70178 0.66 0.900158
Target:  5'- uGGCcgGCGAGGcc-GGUCCCACa--- -3'
miRNA:   3'- -CCGuaCGCUCUacaCCGGGGUGguuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.