miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28926 5' -56.2 NC_006146.1 + 6645 0.67 0.886971
Target:  5'- aGCAa-CGAGGgagGUGGCCC-ACCAGGc -3'
miRNA:   3'- cCGUacGCUCUa--CACCGGGgUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 6973 0.71 0.643975
Target:  5'- uGGCAUGCGAaaa-UGGCCCCcaaCAAGg -3'
miRNA:   3'- -CCGUACGCUcuacACCGGGGug-GUUC- -5'
28926 5' -56.2 NC_006146.1 + 7034 0.67 0.865533
Target:  5'- uGGCAUGCuGGAauUGGCCCgGCaAAGc -3'
miRNA:   3'- -CCGUACGcUCUacACCGGGgUGgUUC- -5'
28926 5' -56.2 NC_006146.1 + 7090 0.66 0.906409
Target:  5'- aGGCAUGCuaaaauUGGCCC-GCCAAGg -3'
miRNA:   3'- -CCGUACGcucuacACCGGGgUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 7142 0.76 0.403736
Target:  5'- uGGCcUGCuAGAauUGGCCCCACUAAGg -3'
miRNA:   3'- -CCGuACGcUCUacACCGGGGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 7196 1.12 0.001984
Target:  5'- aGGCAUGCGAGAUGUGGCCCCACCAAGg -3'
miRNA:   3'- -CCGUACGCUCUACACCGGGGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 10517 0.69 0.781597
Target:  5'- uGGUuUGCGAGAcUG-GGCggCCUGCCAAGg -3'
miRNA:   3'- -CCGuACGCUCU-ACaCCG--GGGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 12072 0.66 0.893678
Target:  5'- cGCuuUGCGAGGgccgGGCCCCgGCCGu- -3'
miRNA:   3'- cCGu-ACGCUCUaca-CCGGGG-UGGUuc -5'
28926 5' -56.2 NC_006146.1 + 15057 0.66 0.906409
Target:  5'- gGGCcUGCGAGGaggcacUGgcgggGGCUCCGCUGAc -3'
miRNA:   3'- -CCGuACGCUCU------ACa----CCGGGGUGGUUc -5'
28926 5' -56.2 NC_006146.1 + 19973 0.71 0.654144
Target:  5'- gGGCGucUGCGAGGUcaggaGGCCCCacgacGCCGGGa -3'
miRNA:   3'- -CCGU--ACGCUCUAca---CCGGGG-----UGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 24030 0.73 0.552946
Target:  5'- aGGCGUcgucccccugGCGGGGUGacgcGGCCCCgaGCCAGGc -3'
miRNA:   3'- -CCGUA----------CGCUCUACa---CCGGGG--UGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 33147 0.69 0.79971
Target:  5'- cGCuccggGUGGGggGUGGCCCgGCUggGc -3'
miRNA:   3'- cCGua---CGCUCuaCACCGGGgUGGuuC- -5'
28926 5' -56.2 NC_006146.1 + 33271 0.69 0.79971
Target:  5'- cGCuccggGUGGGggGUGGCCCgGCUggGc -3'
miRNA:   3'- cCGua---CGCUCuaCACCGGGgUGGuuC- -5'
28926 5' -56.2 NC_006146.1 + 34028 0.68 0.807669
Target:  5'- gGGCAgGCGGGc-GUGGUCCCggggccuaugccgGCCGGGg -3'
miRNA:   3'- -CCGUaCGCUCuaCACCGGGG-------------UGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 34162 0.69 0.79971
Target:  5'- cGGCGaggGUGGGggGUGcGCCCCcaGCCGGa -3'
miRNA:   3'- -CCGUa--CGCUCuaCAC-CGGGG--UGGUUc -5'
28926 5' -56.2 NC_006146.1 + 43635 0.67 0.880042
Target:  5'- gGGCG-GCGGGgcGUGGCCgC-CUggGg -3'
miRNA:   3'- -CCGUaCGCUCuaCACCGGgGuGGuuC- -5'
28926 5' -56.2 NC_006146.1 + 44076 0.69 0.781597
Target:  5'- uGCAUGcCGGGAcugggGUGGUUCCACCucGGg -3'
miRNA:   3'- cCGUAC-GCUCUa----CACCGGGGUGGu-UC- -5'
28926 5' -56.2 NC_006146.1 + 47245 0.67 0.886971
Target:  5'- uGGC--GCGGGucgacGUGGCCCCuggcCCGGGu -3'
miRNA:   3'- -CCGuaCGCUCua---CACCGGGGu---GGUUC- -5'
28926 5' -56.2 NC_006146.1 + 52098 0.68 0.827416
Target:  5'- gGGCcgGCGAGgccAucuguuccccgucgcUGgacaccagcucgGGCCCCACCAGGu -3'
miRNA:   3'- -CCGuaCGCUC---U---------------ACa-----------CCGGGGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 53764 0.67 0.880042
Target:  5'- gGGCG-GCGGGcgGaGGUCUCGCCGGa -3'
miRNA:   3'- -CCGUaCGCUCuaCaCCGGGGUGGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.