miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28926 5' -56.2 NC_006146.1 + 55027 0.67 0.880042
Target:  5'- gGGCggGCGGGAUGggGGUCgggGCCGGGg -3'
miRNA:   3'- -CCGuaCGCUCUACa-CCGGgg-UGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 55481 0.66 0.92376
Target:  5'- cGCggGCGAGAacgaGGCCCgGCCGc- -3'
miRNA:   3'- cCGuaCGCUCUaca-CCGGGgUGGUuc -5'
28926 5' -56.2 NC_006146.1 + 57375 0.66 0.912427
Target:  5'- cGGCGgugGCGccGGUGggcUGGCCCCGCg--- -3'
miRNA:   3'- -CCGUa--CGCu-CUAC---ACCGGGGUGguuc -5'
28926 5' -56.2 NC_006146.1 + 69065 0.7 0.714494
Target:  5'- cGGCAgccCGAGcgcucgGGCCCCGCCGAa -3'
miRNA:   3'- -CCGUac-GCUCuaca--CCGGGGUGGUUc -5'
28926 5' -56.2 NC_006146.1 + 69604 0.66 0.912427
Target:  5'- gGGCA-GCGAGAcGUccaGGCCCaCGuccCCGGGg -3'
miRNA:   3'- -CCGUaCGCUCUaCA---CCGGG-GU---GGUUC- -5'
28926 5' -56.2 NC_006146.1 + 70178 0.66 0.900158
Target:  5'- uGGCcgGCGAGGcc-GGUCCCACa--- -3'
miRNA:   3'- -CCGuaCGCUCUacaCCGGGGUGguuc -5'
28926 5' -56.2 NC_006146.1 + 72198 0.68 0.817223
Target:  5'- cGGCGgccggauggGCGGGAgaccaGcGGCCCCACCc-- -3'
miRNA:   3'- -CCGUa--------CGCUCUa----CaCCGGGGUGGuuc -5'
28926 5' -56.2 NC_006146.1 + 76443 0.66 0.906409
Target:  5'- cGGUggaGUGCGAGGUGUuccucGaGCCCCuugcCCAGu -3'
miRNA:   3'- -CCG---UACGCUCUACA-----C-CGGGGu---GGUUc -5'
28926 5' -56.2 NC_006146.1 + 76569 0.67 0.886971
Target:  5'- cGGCAgagcauUGCGGGAUGgGGCCgcagaggCACCGGa -3'
miRNA:   3'- -CCGU------ACGCUCUACaCCGGg------GUGGUUc -5'
28926 5' -56.2 NC_006146.1 + 81816 0.67 0.872894
Target:  5'- cGGuCAUGagGAGccGUGGCCCaaCACCAGc -3'
miRNA:   3'- -CC-GUACg-CUCuaCACCGGG--GUGGUUc -5'
28926 5' -56.2 NC_006146.1 + 100709 0.68 0.817223
Target:  5'- cGGCGcUGCGGGGguggGUgugggaccGGCCUCGCCGGc -3'
miRNA:   3'- -CCGU-ACGCUCUa---CA--------CCGGGGUGGUUc -5'
28926 5' -56.2 NC_006146.1 + 114701 0.67 0.880042
Target:  5'- cGGCucguccGCGAGAcccgGGCCCUggcgGCCGAGu -3'
miRNA:   3'- -CCGua----CGCUCUaca-CCGGGG----UGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 123230 0.68 0.808545
Target:  5'- uGGUAcaggGCGAGGUugGGCCCCugCGu- -3'
miRNA:   3'- -CCGUa---CGCUCUAcaCCGGGGugGUuc -5'
28926 5' -56.2 NC_006146.1 + 127235 0.66 0.900158
Target:  5'- gGGCcuggagcgaAUGCGAGccG-GGCCCCucuccCCAGGc -3'
miRNA:   3'- -CCG---------UACGCUCuaCaCCGGGGu----GGUUC- -5'
28926 5' -56.2 NC_006146.1 + 127388 0.66 0.893678
Target:  5'- -uCGUG-GAGGUGUcuuggggcugGGCCCCGCCGc- -3'
miRNA:   3'- ccGUACgCUCUACA----------CCGGGGUGGUuc -5'
28926 5' -56.2 NC_006146.1 + 130305 0.72 0.623618
Target:  5'- cGGCAUGCgGAGGUucGGCCgCCcaggGCCAGGa -3'
miRNA:   3'- -CCGUACG-CUCUAcaCCGG-GG----UGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 133073 0.66 0.893678
Target:  5'- uGGUuccggGUGGGGggGUGGUCCCGcuCCGAGa -3'
miRNA:   3'- -CCGua---CGCUCUa-CACCGGGGU--GGUUC- -5'
28926 5' -56.2 NC_006146.1 + 135220 0.66 0.92376
Target:  5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3'
miRNA:   3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 135313 0.66 0.92376
Target:  5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3'
miRNA:   3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 135406 0.66 0.92376
Target:  5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3'
miRNA:   3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.