miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28926 5' -56.2 NC_006146.1 + 170088 0.66 0.92376
Target:  5'- uGGCcgGCGGGAgg-GGCCggCGCCGcAGg -3'
miRNA:   3'- -CCGuaCGCUCUacaCCGGg-GUGGU-UC- -5'
28926 5' -56.2 NC_006146.1 + 169156 0.7 0.704558
Target:  5'- uGGCcgGCGGGAgg-GGCCggcgCCugCAGGg -3'
miRNA:   3'- -CCGuaCGCUCUacaCCGG----GGugGUUC- -5'
28926 5' -56.2 NC_006146.1 + 168224 0.7 0.704558
Target:  5'- uGGCcgGCGGGAgg-GGCCggcgCCugCAGGg -3'
miRNA:   3'- -CCGuaCGCUCUacaCCGG----GGugGUUC- -5'
28926 5' -56.2 NC_006146.1 + 167292 0.7 0.704558
Target:  5'- uGGCcgGCGGGAgg-GGCCggcgCCugCAGGg -3'
miRNA:   3'- -CCGuaCGCUCUacaCCGG----GGugGUUC- -5'
28926 5' -56.2 NC_006146.1 + 167076 0.68 0.808545
Target:  5'- gGGCA-GCGGGG-GU-GCCCCGCCuGGc -3'
miRNA:   3'- -CCGUaCGCUCUaCAcCGGGGUGGuUC- -5'
28926 5' -56.2 NC_006146.1 + 166027 0.69 0.762953
Target:  5'- gGGCAU-CGGGGgugccUGUGGcCCCCGCCc-- -3'
miRNA:   3'- -CCGUAcGCUCU-----ACACC-GGGGUGGuuc -5'
28926 5' -56.2 NC_006146.1 + 161417 0.74 0.493398
Target:  5'- aGGCcUGUGccaggcGGGUGUGGCCCCGcgggaacCCAAGg -3'
miRNA:   3'- -CCGuACGC------UCUACACCGGGGU-------GGUUC- -5'
28926 5' -56.2 NC_006146.1 + 160430 0.7 0.724361
Target:  5'- aGGUA-GUGGGcgGUGGcCCCCAUCAc- -3'
miRNA:   3'- -CCGUaCGCUCuaCACC-GGGGUGGUuc -5'
28926 5' -56.2 NC_006146.1 + 155941 0.66 0.912427
Target:  5'- aGCcgGCGAuGAcgguggagGUGGCCCCggGCgCAGGg -3'
miRNA:   3'- cCGuaCGCU-CUa-------CACCGGGG--UG-GUUC- -5'
28926 5' -56.2 NC_006146.1 + 155706 0.68 0.825734
Target:  5'- cGCGUGUGGGuccuUGUGGguCUCCGCCGGu -3'
miRNA:   3'- cCGUACGCUCu---ACACC--GGGGUGGUUc -5'
28926 5' -56.2 NC_006146.1 + 152863 0.66 0.912427
Target:  5'- aGCcgGCGAuGAcgguggagGUGGCCCCggGCgCAGGg -3'
miRNA:   3'- cCGuaCGCU-CUa-------CACCGGGG--UG-GUUC- -5'
28926 5' -56.2 NC_006146.1 + 152629 0.68 0.825734
Target:  5'- cGCGUGUGGGuccuUGUGGguCUCCGCCGGu -3'
miRNA:   3'- cCGUACGCUCu---ACACC--GGGGUGGUUc -5'
28926 5' -56.2 NC_006146.1 + 149785 0.66 0.912427
Target:  5'- aGCcgGCGAuGAcgguggagGUGGCCCCggGCgCAGGg -3'
miRNA:   3'- cCGuaCGCU-CUa-------CACCGGGG--UG-GUUC- -5'
28926 5' -56.2 NC_006146.1 + 149551 0.68 0.825734
Target:  5'- cGCGUGUGGGuccuUGUGGguCUCCGCCGGu -3'
miRNA:   3'- cCGUACGCUCu---ACACC--GGGGUGGUUc -5'
28926 5' -56.2 NC_006146.1 + 146707 0.66 0.912427
Target:  5'- aGCcgGCGAuGAcgguggagGUGGCCCCggGCgCAGGg -3'
miRNA:   3'- cCGuaCGCU-CUa-------CACCGGGG--UG-GUUC- -5'
28926 5' -56.2 NC_006146.1 + 146473 0.68 0.825734
Target:  5'- cGCGUGUGGGuccuUGUGGguCUCCGCCGGu -3'
miRNA:   3'- cCGUACGCUCu---ACACC--GGGGUGGUUc -5'
28926 5' -56.2 NC_006146.1 + 143630 0.66 0.912427
Target:  5'- aGCcgGCGAuGAcgguggagGUGGCCCCggGCgCAGGg -3'
miRNA:   3'- cCGuaCGCU-CUa-------CACCGGGG--UG-GUUC- -5'
28926 5' -56.2 NC_006146.1 + 143395 0.68 0.825734
Target:  5'- cGCGUGUGGGuccuUGUGGguCUCCGCCGGu -3'
miRNA:   3'- cCGUACGCUCu---ACACC--GGGGUGGUUc -5'
28926 5' -56.2 NC_006146.1 + 137993 0.7 0.73415
Target:  5'- cGGCGggGUGGGggGUGcGCCCCcaGCCGGa -3'
miRNA:   3'- -CCGUa-CGCUCuaCAC-CGGGG--UGGUUc -5'
28926 5' -56.2 NC_006146.1 + 137856 0.67 0.865533
Target:  5'- gGGUggGUGGGcGUGUcccgGGCCCCGCCc-- -3'
miRNA:   3'- -CCGuaCGCUC-UACA----CCGGGGUGGuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.