Results 21 - 40 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28926 | 5' | -56.2 | NC_006146.1 | + | 137648 | 0.68 | 0.817223 |
Target: 5'- aGGCAaGCGGGuucGUGGagcCCCCACCc-- -3' miRNA: 3'- -CCGUaCGCUCua-CACC---GGGGUGGuuc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 137543 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 137450 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 137357 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 137264 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 137171 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 137078 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 136985 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 136892 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 136799 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 136707 | 0.66 | 0.900158 |
Target: 5'- cGCuccgGCGGGggGUGGCCggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG-----GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 136614 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 136521 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 136428 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 136335 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 136242 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 136149 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 136056 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 135963 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 135870 | 0.66 | 0.92376 |
Target: 5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3' miRNA: 3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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