miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28926 5' -56.2 NC_006146.1 + 130305 0.72 0.623618
Target:  5'- cGGCAUGCgGAGGUucGGCCgCCcaggGCCAGGa -3'
miRNA:   3'- -CCGUACG-CUCUAcaCCGG-GG----UGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 81816 0.67 0.872894
Target:  5'- cGGuCAUGagGAGccGUGGCCCaaCACCAGc -3'
miRNA:   3'- -CC-GUACg-CUCuaCACCGGG--GUGGUUc -5'
28926 5' -56.2 NC_006146.1 + 55027 0.67 0.880042
Target:  5'- gGGCggGCGGGAUGggGGUCgggGCCGGGg -3'
miRNA:   3'- -CCGuaCGCUCUACa-CCGGgg-UGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 55481 0.66 0.92376
Target:  5'- cGCggGCGAGAacgaGGCCCgGCCGc- -3'
miRNA:   3'- cCGuaCGCUCUaca-CCGGGgUGGUuc -5'
28926 5' -56.2 NC_006146.1 + 69065 0.7 0.714494
Target:  5'- cGGCAgccCGAGcgcucgGGCCCCGCCGAa -3'
miRNA:   3'- -CCGUac-GCUCuaca--CCGGGGUGGUUc -5'
28926 5' -56.2 NC_006146.1 + 160430 0.7 0.724361
Target:  5'- aGGUA-GUGGGcgGUGGcCCCCAUCAc- -3'
miRNA:   3'- -CCGUaCGCUCuaCACC-GGGGUGGUuc -5'
28926 5' -56.2 NC_006146.1 + 166027 0.69 0.762953
Target:  5'- gGGCAU-CGGGGgugccUGUGGcCCCCGCCc-- -3'
miRNA:   3'- -CCGUAcGCUCU-----ACACC-GGGGUGGuuc -5'
28926 5' -56.2 NC_006146.1 + 44076 0.69 0.781597
Target:  5'- uGCAUGcCGGGAcugggGUGGUUCCACCucGGg -3'
miRNA:   3'- cCGUAC-GCUCUa----CACCGGGGUGGu-UC- -5'
28926 5' -56.2 NC_006146.1 + 34162 0.69 0.79971
Target:  5'- cGGCGaggGUGGGggGUGcGCCCCcaGCCGGa -3'
miRNA:   3'- -CCGUa--CGCUCuaCAC-CGGGG--UGGUUc -5'
28926 5' -56.2 NC_006146.1 + 137856 0.67 0.865533
Target:  5'- gGGUggGUGGGcGUGUcccgGGCCCCGCCc-- -3'
miRNA:   3'- -CCGuaCGCUC-UACA----CCGGGGUGGuuc -5'
28926 5' -56.2 NC_006146.1 + 123230 0.68 0.808545
Target:  5'- uGGUAcaggGCGAGGUugGGCCCCugCGu- -3'
miRNA:   3'- -CCGUa---CGCUCUAcaCCGGGGugGUuc -5'
28926 5' -56.2 NC_006146.1 + 33271 0.69 0.79971
Target:  5'- cGCuccggGUGGGggGUGGCCCgGCUggGc -3'
miRNA:   3'- cCGua---CGCUCuaCACCGGGgUGGuuC- -5'
28926 5' -56.2 NC_006146.1 + 167292 0.7 0.704558
Target:  5'- uGGCcgGCGGGAgg-GGCCggcgCCugCAGGg -3'
miRNA:   3'- -CCGuaCGCUCUacaCCGG----GGugGUUC- -5'
28926 5' -56.2 NC_006146.1 + 137648 0.68 0.817223
Target:  5'- aGGCAaGCGGGuucGUGGagcCCCCACCc-- -3'
miRNA:   3'- -CCGUaCGCUCua-CACC---GGGGUGGuuc -5'
28926 5' -56.2 NC_006146.1 + 168224 0.7 0.704558
Target:  5'- uGGCcgGCGGGAgg-GGCCggcgCCugCAGGg -3'
miRNA:   3'- -CCGuaCGCUCUacaCCGG----GGugGUUC- -5'
28926 5' -56.2 NC_006146.1 + 33147 0.69 0.79971
Target:  5'- cGCuccggGUGGGggGUGGCCCgGCUggGc -3'
miRNA:   3'- cCGua---CGCUCuaCACCGGGgUGGuuC- -5'
28926 5' -56.2 NC_006146.1 + 52098 0.68 0.827416
Target:  5'- gGGCcgGCGAGgccAucuguuccccgucgcUGgacaccagcucgGGCCCCACCAGGu -3'
miRNA:   3'- -CCGuaCGCUC---U---------------ACa-----------CCGGGGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 53764 0.67 0.880042
Target:  5'- gGGCG-GCGGGcgGaGGUCUCGCCGGa -3'
miRNA:   3'- -CCGUaCGCUCuaCaCCGGGGUGGUUc -5'
28926 5' -56.2 NC_006146.1 + 169156 0.7 0.704558
Target:  5'- uGGCcgGCGGGAgg-GGCCggcgCCugCAGGg -3'
miRNA:   3'- -CCGuaCGCUCUacaCCGG----GGugGUUC- -5'
28926 5' -56.2 NC_006146.1 + 137993 0.7 0.73415
Target:  5'- cGGCGggGUGGGggGUGcGCCCCcaGCCGGa -3'
miRNA:   3'- -CCGUa-CGCUCuaCAC-CGGGG--UGGUUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.