miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28926 5' -56.2 NC_006146.1 + 70178 0.66 0.900158
Target:  5'- uGGCcgGCGAGGcc-GGUCCCACa--- -3'
miRNA:   3'- -CCGuaCGCUCUacaCCGGGGUGguuc -5'
28926 5' -56.2 NC_006146.1 + 127235 0.66 0.900158
Target:  5'- gGGCcuggagcgaAUGCGAGccG-GGCCCCucuccCCAGGc -3'
miRNA:   3'- -CCG---------UACGCUCuaCaCCGGGGu----GGUUC- -5'
28926 5' -56.2 NC_006146.1 + 53764 0.67 0.880042
Target:  5'- gGGCG-GCGGGcgGaGGUCUCGCCGGa -3'
miRNA:   3'- -CCGUaCGCUCuaCaCCGGGGUGGUUc -5'
28926 5' -56.2 NC_006146.1 + 52098 0.68 0.827416
Target:  5'- gGGCcgGCGAGgccAucuguuccccgucgcUGgacaccagcucgGGCCCCACCAGGu -3'
miRNA:   3'- -CCGuaCGCUC---U---------------ACa-----------CCGGGGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 135963 0.66 0.92376
Target:  5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3'
miRNA:   3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 135313 0.66 0.92376
Target:  5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3'
miRNA:   3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 76569 0.67 0.886971
Target:  5'- cGGCAgagcauUGCGGGAUGgGGCCgcagaggCACCGGa -3'
miRNA:   3'- -CCGU------ACGCUCUACaCCGGg------GUGGUUc -5'
28926 5' -56.2 NC_006146.1 + 137648 0.68 0.817223
Target:  5'- aGGCAaGCGGGuucGUGGagcCCCCACCc-- -3'
miRNA:   3'- -CCGUaCGCUCua-CACC---GGGGUGGuuc -5'
28926 5' -56.2 NC_006146.1 + 135220 0.66 0.92376
Target:  5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3'
miRNA:   3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 123230 0.68 0.808545
Target:  5'- uGGUAcaggGCGAGGUugGGCCCCugCGu- -3'
miRNA:   3'- -CCGUa---CGCUCUAcaCCGGGGugGUuc -5'
28926 5' -56.2 NC_006146.1 + 133073 0.66 0.893678
Target:  5'- uGGUuccggGUGGGGggGUGGUCCCGcuCCGAGa -3'
miRNA:   3'- -CCGua---CGCUCUa-CACCGGGGU--GGUUC- -5'
28926 5' -56.2 NC_006146.1 + 136707 0.66 0.900158
Target:  5'- cGCuccgGCGGGggGUGGCCggccgCUGCCGGGu -3'
miRNA:   3'- cCGua--CGCUCuaCACCGG-----GGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 47245 0.67 0.886971
Target:  5'- uGGC--GCGGGucgacGUGGCCCCuggcCCGGGu -3'
miRNA:   3'- -CCGuaCGCUCua---CACCGGGGu---GGUUC- -5'
28926 5' -56.2 NC_006146.1 + 55027 0.67 0.880042
Target:  5'- gGGCggGCGGGAUGggGGUCgggGCCGGGg -3'
miRNA:   3'- -CCGuaCGCUCUACa-CCGGgg-UGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 81816 0.67 0.872894
Target:  5'- cGGuCAUGagGAGccGUGGCCCaaCACCAGc -3'
miRNA:   3'- -CC-GUACg-CUCuaCACCGGG--GUGGUUc -5'
28926 5' -56.2 NC_006146.1 + 137856 0.67 0.865533
Target:  5'- gGGUggGUGGGcGUGUcccgGGCCCCGCCc-- -3'
miRNA:   3'- -CCGuaCGCUC-UACA----CCGGGGUGGuuc -5'
28926 5' -56.2 NC_006146.1 + 55481 0.66 0.92376
Target:  5'- cGCggGCGAGAacgaGGCCCgGCCGc- -3'
miRNA:   3'- cCGuaCGCUCUaca-CCGGGgUGGUuc -5'
28926 5' -56.2 NC_006146.1 + 136056 0.66 0.92376
Target:  5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3'
miRNA:   3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 135685 0.66 0.92376
Target:  5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3'
miRNA:   3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5'
28926 5' -56.2 NC_006146.1 + 135406 0.66 0.92376
Target:  5'- cGCuccgGCGGGggGUGGCCgggccgCUGCCGGGu -3'
miRNA:   3'- cCGua--CGCUCuaCACCGG------GGUGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.