Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28926 | 5' | -56.2 | NC_006146.1 | + | 72198 | 0.68 | 0.817223 |
Target: 5'- cGGCGgccggauggGCGGGAgaccaGcGGCCCCACCc-- -3' miRNA: 3'- -CCGUa--------CGCUCUa----CaCCGGGGUGGuuc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 43635 | 0.67 | 0.880042 |
Target: 5'- gGGCG-GCGGGgcGUGGCCgC-CUggGg -3' miRNA: 3'- -CCGUaCGCUCuaCACCGGgGuGGuuC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 7034 | 0.67 | 0.865533 |
Target: 5'- uGGCAUGCuGGAauUGGCCCgGCaAAGc -3' miRNA: 3'- -CCGUACGcUCUacACCGGGgUGgUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 155706 | 0.68 | 0.825734 |
Target: 5'- cGCGUGUGGGuccuUGUGGguCUCCGCCGGu -3' miRNA: 3'- cCGUACGCUCu---ACACC--GGGGUGGUUc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 152629 | 0.68 | 0.825734 |
Target: 5'- cGCGUGUGGGuccuUGUGGguCUCCGCCGGu -3' miRNA: 3'- cCGUACGCUCu---ACACC--GGGGUGGUUc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 149551 | 0.68 | 0.825734 |
Target: 5'- cGCGUGUGGGuccuUGUGGguCUCCGCCGGu -3' miRNA: 3'- cCGUACGCUCu---ACACC--GGGGUGGUUc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 146473 | 0.68 | 0.825734 |
Target: 5'- cGCGUGUGGGuccuUGUGGguCUCCGCCGGu -3' miRNA: 3'- cCGUACGCUCu---ACACC--GGGGUGGUUc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 143395 | 0.68 | 0.825734 |
Target: 5'- cGCGUGUGGGuccuUGUGGguCUCCGCCGGu -3' miRNA: 3'- cCGUACGCUCu---ACACC--GGGGUGGUUc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 100709 | 0.68 | 0.817223 |
Target: 5'- cGGCGcUGCGGGGguggGUgugggaccGGCCUCGCCGGc -3' miRNA: 3'- -CCGU-ACGCUCUa---CA--------CCGGGGUGGUUc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 114701 | 0.67 | 0.880042 |
Target: 5'- cGGCucguccGCGAGAcccgGGCCCUggcgGCCGAGu -3' miRNA: 3'- -CCGua----CGCUCUaca-CCGGGG----UGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 6645 | 0.67 | 0.886971 |
Target: 5'- aGCAa-CGAGGgagGUGGCCC-ACCAGGc -3' miRNA: 3'- cCGUacGCUCUa--CACCGGGgUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 127388 | 0.66 | 0.893678 |
Target: 5'- -uCGUG-GAGGUGUcuuggggcugGGCCCCGCCGc- -3' miRNA: 3'- ccGUACgCUCUACA----------CCGGGGUGGUuc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 152863 | 0.66 | 0.912427 |
Target: 5'- aGCcgGCGAuGAcgguggagGUGGCCCCggGCgCAGGg -3' miRNA: 3'- cCGuaCGCU-CUa-------CACCGGGG--UG-GUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 149785 | 0.66 | 0.912427 |
Target: 5'- aGCcgGCGAuGAcgguggagGUGGCCCCggGCgCAGGg -3' miRNA: 3'- cCGuaCGCU-CUa-------CACCGGGG--UG-GUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 146707 | 0.66 | 0.912427 |
Target: 5'- aGCcgGCGAuGAcgguggagGUGGCCCCggGCgCAGGg -3' miRNA: 3'- cCGuaCGCU-CUa-------CACCGGGG--UG-GUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 143630 | 0.66 | 0.912427 |
Target: 5'- aGCcgGCGAuGAcgguggagGUGGCCCCggGCgCAGGg -3' miRNA: 3'- cCGuaCGCU-CUa-------CACCGGGG--UG-GUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 76443 | 0.66 | 0.906409 |
Target: 5'- cGGUggaGUGCGAGGUGUuccucGaGCCCCuugcCCAGu -3' miRNA: 3'- -CCG---UACGCUCUACA-----C-CGGGGu---GGUUc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 15057 | 0.66 | 0.906409 |
Target: 5'- gGGCcUGCGAGGaggcacUGgcgggGGCUCCGCUGAc -3' miRNA: 3'- -CCGuACGCUCU------ACa----CCGGGGUGGUUc -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 7090 | 0.66 | 0.906409 |
Target: 5'- aGGCAUGCuaaaauUGGCCC-GCCAAGg -3' miRNA: 3'- -CCGUACGcucuacACCGGGgUGGUUC- -5' |
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28926 | 5' | -56.2 | NC_006146.1 | + | 12072 | 0.66 | 0.893678 |
Target: 5'- cGCuuUGCGAGGgccgGGCCCCgGCCGu- -3' miRNA: 3'- cCGu-ACGCUCUaca-CCGGGG-UGGUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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