Results 41 - 60 of 472 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28928 | 3' | -54 | NC_006146.1 | + | 49081 | 0.66 | 0.971356 |
Target: 5'- -aGGGCU--GAGGCUCCGGCuguggcucaGGCGGCu -3' miRNA: 3'- ugCCCGGugUUUUGGGGCUG---------UUGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 8007 | 0.66 | 0.971356 |
Target: 5'- gGCGcGCgGCAGGACUgCGAgGACuGCa -3' miRNA: 3'- -UGCcCGgUGUUUUGGgGCUgUUGuCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 49754 | 0.66 | 0.971356 |
Target: 5'- -gGGGCgCGCGgcccAGGCCCaGACGcCGGCu -3' miRNA: 3'- ugCCCG-GUGU----UUUGGGgCUGUuGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 168354 | 0.66 | 0.971356 |
Target: 5'- gUGGGCUgaaGAAccagguGCCCCGaguaggugucucGCAGCGGCg -3' miRNA: 3'- uGCCCGGug-UUU------UGGGGC------------UGUUGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 54668 | 0.66 | 0.971356 |
Target: 5'- aGCuGGCC-CcGAAUCCCGcCGACAaGCg -3' miRNA: 3'- -UGcCCGGuGuUUUGGGGCuGUUGU-CG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 110270 | 0.66 | 0.968407 |
Target: 5'- --uGGCCuGCAGAGCCCCGucugccaugaugGCcuCGGCg -3' miRNA: 3'- ugcCCGG-UGUUUUGGGGC------------UGuuGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 55446 | 0.66 | 0.968407 |
Target: 5'- aAUGGaGCUcCAGGACUCUGuCAugGGCa -3' miRNA: 3'- -UGCC-CGGuGUUUUGGGGCuGUugUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 24690 | 0.66 | 0.965248 |
Target: 5'- cAUGGccGCCGCuu-ACCCCGGaggagcccauGCAGCa -3' miRNA: 3'- -UGCC--CGGUGuuuUGGGGCUgu--------UGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 123373 | 0.66 | 0.965248 |
Target: 5'- cGCuGGCCG-GGGGCCCCG-CAACcuGGCu -3' miRNA: 3'- -UGcCCGGUgUUUUGGGGCuGUUG--UCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 141666 | 0.66 | 0.965248 |
Target: 5'- cCGGGCCGcCGGggUCCCucCGGcCGGCc -3' miRNA: 3'- uGCCCGGU-GUUuuGGGGcuGUU-GUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 144743 | 0.66 | 0.965248 |
Target: 5'- cCGGGCCGcCGGggUCCCucCGGcCGGCc -3' miRNA: 3'- uGCCCGGU-GUUuuGGGGcuGUU-GUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 147821 | 0.66 | 0.965248 |
Target: 5'- cCGGGCCGcCGGggUCCCucCGGcCGGCc -3' miRNA: 3'- uGCCCGGU-GUUuuGGGGcuGUU-GUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 150899 | 0.66 | 0.965248 |
Target: 5'- cCGGGCCGcCGGggUCCCucCGGcCGGCc -3' miRNA: 3'- uGCCCGGU-GUUuuGGGGcuGUU-GUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 153977 | 0.66 | 0.965248 |
Target: 5'- cCGGGCCGcCGGggUCCCucCGGcCGGCc -3' miRNA: 3'- uGCCCGGU-GUUuuGGGGcuGUU-GUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 157055 | 0.66 | 0.965248 |
Target: 5'- cCGGGCCGcCGGggUCCCucCGGcCGGCc -3' miRNA: 3'- uGCCCGGU-GUUuuGGGGcuGUU-GUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 58081 | 0.66 | 0.965574 |
Target: 5'- cCGGGaCAUu-GGCCCCGGCcgguaaaguuaagauGCAGCa -3' miRNA: 3'- uGCCCgGUGuuUUGGGGCUGu--------------UGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 44279 | 0.66 | 0.968407 |
Target: 5'- -aGGGCUGCAGAGCUaCC-ACAAC-GCa -3' miRNA: 3'- ugCCCGGUGUUUUGG-GGcUGUUGuCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 19509 | 0.66 | 0.968407 |
Target: 5'- cCGcGCCAUc---CCCCGccuGCAGCAGCg -3' miRNA: 3'- uGCcCGGUGuuuuGGGGC---UGUUGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 59449 | 0.66 | 0.968407 |
Target: 5'- -aGGGCaggggGCAGGAcuCCCCGAUGAUggaGGCa -3' miRNA: 3'- ugCCCGg----UGUUUU--GGGGCUGUUG---UCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 124153 | 0.66 | 0.968407 |
Target: 5'- uCGGGagGCGAgGACCCUGGC--CAGCg -3' miRNA: 3'- uGCCCggUGUU-UUGGGGCUGuuGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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