miRNA display CGI


Results 81 - 100 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 3' -54 NC_006146.1 + 143574 0.66 0.961874
Target:  5'- cCGGGCCugGAAGgUCCGGUGGCuucGCu -3'
miRNA:   3'- uGCCCGGugUUUUgGGGCUGUUGu--CG- -5'
28928 3' -54 NC_006146.1 + 101681 0.66 0.961874
Target:  5'- aACGGGCUACGGgcGGCgCUagagggggggaGAgAGCAGCg -3'
miRNA:   3'- -UGCCCGGUGUU--UUGgGG-----------CUgUUGUCG- -5'
28928 3' -54 NC_006146.1 + 76894 0.66 0.961874
Target:  5'- cCGGGCCGCAcguggGAGCCagaggugaCCGcgggGCuGCAGCc -3'
miRNA:   3'- uGCCCGGUGU-----UUUGG--------GGC----UGuUGUCG- -5'
28928 3' -54 NC_006146.1 + 27391 0.66 0.961874
Target:  5'- cCGGGgCACAGAcgcguggcaucACCCCGAgaGACgAGUu -3'
miRNA:   3'- uGCCCgGUGUUU-----------UGGGGCUg-UUG-UCG- -5'
28928 3' -54 NC_006146.1 + 87918 0.66 0.961874
Target:  5'- -aGcGGCCugGGuuuCCCCGGCGGCuuuGUc -3'
miRNA:   3'- ugC-CCGGugUUuu-GGGGCUGUUGu--CG- -5'
28928 3' -54 NC_006146.1 + 18610 0.66 0.958279
Target:  5'- aGCGGGCgACcAAACCUUcgGugGcCAGCa -3'
miRNA:   3'- -UGCCCGgUGuUUUGGGG--CugUuGUCG- -5'
28928 3' -54 NC_006146.1 + 78844 0.66 0.958279
Target:  5'- cCGGGggAgAGAACUCCGGCAgacuccgguGCAGCu -3'
miRNA:   3'- uGCCCggUgUUUUGGGGCUGU---------UGUCG- -5'
28928 3' -54 NC_006146.1 + 112054 0.66 0.958279
Target:  5'- -gGGGCUGCc-GGCCuuGACGGC-GCa -3'
miRNA:   3'- ugCCCGGUGuuUUGGggCUGUUGuCG- -5'
28928 3' -54 NC_006146.1 + 155885 0.66 0.961874
Target:  5'- cCGGGCCugGAAGgUCCGGUGGCuucGCu -3'
miRNA:   3'- uGCCCGGugUUUUgGGGCUGUUGu--CG- -5'
28928 3' -54 NC_006146.1 + 123373 0.66 0.965248
Target:  5'- cGCuGGCCG-GGGGCCCCG-CAACcuGGCu -3'
miRNA:   3'- -UGcCCGGUgUUUUGGGGCuGUUG--UCG- -5'
28928 3' -54 NC_006146.1 + 24690 0.66 0.965248
Target:  5'- cAUGGccGCCGCuu-ACCCCGGaggagcccauGCAGCa -3'
miRNA:   3'- -UGCC--CGGUGuuuUGGGGCUgu--------UGUCG- -5'
28928 3' -54 NC_006146.1 + 129315 0.66 0.965248
Target:  5'- cCGGGCCuCuccGCCUCGGCcagccaguaGGCGGCc -3'
miRNA:   3'- uGCCCGGuGuuuUGGGGCUG---------UUGUCG- -5'
28928 3' -54 NC_006146.1 + 128972 0.66 0.965248
Target:  5'- cACGGGCCuCGGGuucuGCCUCaGCAagggggggucGCAGCu -3'
miRNA:   3'- -UGCCCGGuGUUU----UGGGGcUGU----------UGUCG- -5'
28928 3' -54 NC_006146.1 + 52413 0.66 0.965248
Target:  5'- -gGGGCCGuCAAGACCgUGGCcuCuGCc -3'
miRNA:   3'- ugCCCGGU-GUUUUGGgGCUGuuGuCG- -5'
28928 3' -54 NC_006146.1 + 87265 0.66 0.965248
Target:  5'- cUGGcCCGCAGAGCCCCcgccaccaauuGACuuuaacaaGACAGCc -3'
miRNA:   3'- uGCCcGGUGUUUUGGGG-----------CUG--------UUGUCG- -5'
28928 3' -54 NC_006146.1 + 60898 0.66 0.965248
Target:  5'- gACGGaGCCcUGAGGCCCC-ACAuccCGGCc -3'
miRNA:   3'- -UGCC-CGGuGUUUUGGGGcUGUu--GUCG- -5'
28928 3' -54 NC_006146.1 + 12081 0.66 0.965248
Target:  5'- -aGGGCCG---GGCCCCGGCcgugugccugAACAcGCu -3'
miRNA:   3'- ugCCCGGUguuUUGGGGCUG----------UUGU-CG- -5'
28928 3' -54 NC_006146.1 + 120807 0.66 0.961874
Target:  5'- cGCGuGGCCggacaaGCGGGGCCgCCGugGACGa- -3'
miRNA:   3'- -UGC-CCGG------UGUUUUGG-GGCugUUGUcg -5'
28928 3' -54 NC_006146.1 + 165658 0.66 0.961874
Target:  5'- uUGGGuccgugaccCCACA--GCCCCGAgGcCGGCa -3'
miRNA:   3'- uGCCC---------GGUGUuuUGGGGCUgUuGUCG- -5'
28928 3' -54 NC_006146.1 + 149355 0.67 0.950408
Target:  5'- gGCGGGCCugAA-GCCCgGGuugaGGCg -3'
miRNA:   3'- -UGCCCGGugUUuUGGGgCUguugUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.