miRNA display CGI


Results 101 - 120 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 3' -54 NC_006146.1 + 136413 0.67 0.946124
Target:  5'- cUGGGuCCGCu--GCCCCG-CucCGGCg -3'
miRNA:   3'- uGCCC-GGUGuuuUGGGGCuGuuGUCG- -5'
28928 3' -54 NC_006146.1 + 136506 0.67 0.946124
Target:  5'- cUGGGuCCGCu--GCCCCG-CucCGGCg -3'
miRNA:   3'- uGCCC-GGUGuuuUGGGGCuGuuGUCG- -5'
28928 3' -54 NC_006146.1 + 136784 0.67 0.946124
Target:  5'- cUGGGuCCGCu--GCCCCG-CucCGGCg -3'
miRNA:   3'- uGCCC-GGUGuuuUGGGGCuGuuGUCG- -5'
28928 3' -54 NC_006146.1 + 136970 0.67 0.946124
Target:  5'- cUGGGuCCGCu--GCCCCG-CucCGGCg -3'
miRNA:   3'- uGCCC-GGUGuuuUGGGGCuGuuGUCG- -5'
28928 3' -54 NC_006146.1 + 137063 0.67 0.946124
Target:  5'- cUGGGuCCGCu--GCCCCG-CucCGGCg -3'
miRNA:   3'- uGCCC-GGUGuuuUGGGGCuGuuGUCG- -5'
28928 3' -54 NC_006146.1 + 136877 0.67 0.946124
Target:  5'- cUGGGuCCGCu--GCCCCG-CucCGGCg -3'
miRNA:   3'- uGCCC-GGUGuuuUGGGGCuGuuGUCG- -5'
28928 3' -54 NC_006146.1 + 136320 0.67 0.946124
Target:  5'- cUGGGuCCGCu--GCCCCG-CucCGGCg -3'
miRNA:   3'- uGCCC-GGUGuuuUGGGGCuGuuGUCG- -5'
28928 3' -54 NC_006146.1 + 136599 0.67 0.946124
Target:  5'- cUGGGuCCGCu--GCCCCG-CucCGGCg -3'
miRNA:   3'- uGCCC-GGUGuuuUGGGGCuGuuGUCG- -5'
28928 3' -54 NC_006146.1 + 135948 0.67 0.946124
Target:  5'- cUGGGuCCGCu--GCCCCG-CucCGGCg -3'
miRNA:   3'- uGCCC-GGUGuuuUGGGGCuGuuGUCG- -5'
28928 3' -54 NC_006146.1 + 152433 0.67 0.950408
Target:  5'- gGCGGGCCugAA-GCCCgGGuugaGGCg -3'
miRNA:   3'- -UGCCCGGugUUuUGGGgCUguugUCG- -5'
28928 3' -54 NC_006146.1 + 158590 0.67 0.950408
Target:  5'- gGCGGGCCugAA-GCCCgGGuugaGGCg -3'
miRNA:   3'- -UGCCCGGugUUuUGGGgCUguugUCG- -5'
28928 3' -54 NC_006146.1 + 135670 0.67 0.946124
Target:  5'- cUGGGuCCGCu--GCCCCG-CucCGGCg -3'
miRNA:   3'- uGCCC-GGUGuuuUGGGGCuGuuGUCG- -5'
28928 3' -54 NC_006146.1 + 149355 0.67 0.950408
Target:  5'- gGCGGGCCugAA-GCCCgGGuugaGGCg -3'
miRNA:   3'- -UGCCCGGugUUuUGGGgCUguugUCG- -5'
28928 3' -54 NC_006146.1 + 155511 0.67 0.950408
Target:  5'- gGCGGGCCugAA-GCCCgGGuugaGGCg -3'
miRNA:   3'- -UGCCCGGugUUuUGGGgCUguugUCG- -5'
28928 3' -54 NC_006146.1 + 146277 0.67 0.950408
Target:  5'- gGCGGGCCugAA-GCCCgGGuugaGGCg -3'
miRNA:   3'- -UGCCCGGugUUuUGGGgCUguugUCG- -5'
28928 3' -54 NC_006146.1 + 4055 0.67 0.952056
Target:  5'- cCGGGCUuccUAAGAacauccccccaauguCCCCGACAAaAGCa -3'
miRNA:   3'- uGCCCGGu--GUUUU---------------GGGGCUGUUgUCG- -5'
28928 3' -54 NC_006146.1 + 57644 0.67 0.954458
Target:  5'- -aGGGCCACAAGuuuggcguGCCCCuGucuUAugGGUg -3'
miRNA:   3'- ugCCCGGUGUUU--------UGGGG-Cu--GUugUCG- -5'
28928 3' -54 NC_006146.1 + 135762 0.67 0.946124
Target:  5'- cUGGGuCCGCu--GCCCCG-CucCGGCg -3'
miRNA:   3'- uGCCC-GGUGuuuUGGGGCuGuuGUCG- -5'
28928 3' -54 NC_006146.1 + 135855 0.67 0.946124
Target:  5'- cUGGGuCCGCu--GCCCCG-CucCGGCg -3'
miRNA:   3'- uGCCC-GGUGuuuUGGGGCuGuuGUCG- -5'
28928 3' -54 NC_006146.1 + 15194 0.67 0.954458
Target:  5'- uGCGcGGCCGCcuucACCUCGAacccGCAGUa -3'
miRNA:   3'- -UGC-CCGGUGuuu-UGGGGCUgu--UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.