miRNA display CGI


Results 41 - 60 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 3' -54 NC_006146.1 + 34082 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 34733 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 33525 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 33804 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 34826 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 35104 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 35011 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 34454 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 68323 0.75 0.594365
Target:  5'- uCGGGCCGCGAGaggaugGCgUCGAgGACGGCc -3'
miRNA:   3'- uGCCCGGUGUUU------UGgGGCUgUUGUCG- -5'
28928 3' -54 NC_006146.1 + 35569 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 35662 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 35383 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 35755 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 33711 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 123162 0.75 0.563811
Target:  5'- -aGGGCgCGCGAGgagGCCCCGgACGACgAGCu -3'
miRNA:   3'- ugCCCG-GUGUUU---UGGGGC-UGUUG-UCG- -5'
28928 3' -54 NC_006146.1 + 149838 0.75 0.553713
Target:  5'- gUGGGCgGcCAGGGCCUCGGCGaagcGCAGCg -3'
miRNA:   3'- uGCCCGgU-GUUUUGGGGCUGU----UGUCG- -5'
28928 3' -54 NC_006146.1 + 35197 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 35290 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 33618 0.75 0.553713
Target:  5'- cCGGGCaGCGGA--CCCGGCAGCGGCc -3'
miRNA:   3'- uGCCCGgUGUUUugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 11632 0.74 0.614886
Target:  5'- -aGGGCCcCGAGGCCCgCGugG-CGGCg -3'
miRNA:   3'- ugCCCGGuGUUUUGGG-GCugUuGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.