miRNA display CGI


Results 61 - 80 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 3' -54 NC_006146.1 + 126135 0.74 0.656022
Target:  5'- cUGGGuuccccgcCCGCcGGGCCCCGACAaccACAGCc -3'
miRNA:   3'- uGCCC--------GGUGuUUUGGGGCUGU---UGUCG- -5'
28928 3' -54 NC_006146.1 + 137756 0.74 0.656022
Target:  5'- cCGGGCCACc---CCCCacccggagcggGGCAGCGGCc -3'
miRNA:   3'- uGCCCGGUGuuuuGGGG-----------CUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 149215 0.74 0.62517
Target:  5'- -aGGGCCugAAAgGCCCCGGCGcCuGGCu -3'
miRNA:   3'- ugCCCGGugUUU-UGGGGCUGUuG-UCG- -5'
28928 3' -54 NC_006146.1 + 143059 0.74 0.62517
Target:  5'- -aGGGCCugAAAgGCCCCGGCGcCuGGCu -3'
miRNA:   3'- ugCCCGGugUUU-UGGGGCUGUuG-UCG- -5'
28928 3' -54 NC_006146.1 + 146137 0.74 0.62517
Target:  5'- -aGGGCCugAAAgGCCCCGGCGcCuGGCu -3'
miRNA:   3'- ugCCCGGugUUU-UGGGGCUGUuG-UCG- -5'
28928 3' -54 NC_006146.1 + 11632 0.74 0.614886
Target:  5'- -aGGGCCcCGAGGCCCgCGugG-CGGCg -3'
miRNA:   3'- ugCCCGGuGUUUUGGG-GCugUuGUCG- -5'
28928 3' -54 NC_006146.1 + 152293 0.74 0.62517
Target:  5'- -aGGGCCugAAAgGCCCCGGCGcCuGGCu -3'
miRNA:   3'- ugCCCGGugUUU-UGGGGCUGUuG-UCG- -5'
28928 3' -54 NC_006146.1 + 158450 0.74 0.62517
Target:  5'- -aGGGCCugAAAgGCCCCGGCGcCuGGCu -3'
miRNA:   3'- ugCCCGGugUUU-UGGGGCUGUuG-UCG- -5'
28928 3' -54 NC_006146.1 + 137633 0.74 0.656022
Target:  5'- cCGGGCCACc---CCCCacccggagcggGGCAGCGGCc -3'
miRNA:   3'- uGCCCGGUGuuuuGGGG-----------CUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 64307 0.74 0.614886
Target:  5'- cACGGGCCugG-GGCCguaCUGGCGGCAGUa -3'
miRNA:   3'- -UGCCCGGugUuUUGG---GGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 58555 0.74 0.645746
Target:  5'- gGCGGcCUACAugGAGCCCUGGC-ACAGCc -3'
miRNA:   3'- -UGCCcGGUGU--UUUGGGGCUGuUGUCG- -5'
28928 3' -54 NC_006146.1 + 146863 0.74 0.645746
Target:  5'- -gGGGCCGCGucACCCCGcCAGgGGg -3'
miRNA:   3'- ugCCCGGUGUuuUGGGGCuGUUgUCg -5'
28928 3' -54 NC_006146.1 + 47633 0.74 0.62517
Target:  5'- -aGGGCCACGAGccguCUCUGGCcGCGGCc -3'
miRNA:   3'- ugCCCGGUGUUUu---GGGGCUGuUGUCG- -5'
28928 3' -54 NC_006146.1 + 93804 0.74 0.656022
Target:  5'- aAUGGGCCAgGuucuuCCCgGACAgaGCGGCa -3'
miRNA:   3'- -UGCCCGGUgUuuu--GGGgCUGU--UGUCG- -5'
28928 3' -54 NC_006146.1 + 4876 0.73 0.696844
Target:  5'- -gGGGCCACAGGcacCCCCGAugcccaCAACcGCa -3'
miRNA:   3'- ugCCCGGUGUUUu--GGGGCU------GUUGuCG- -5'
28928 3' -54 NC_006146.1 + 165969 0.73 0.705929
Target:  5'- cCGGGgCACAGAGCacggccaCCCGACAGCGa- -3'
miRNA:   3'- uGCCCgGUGUUUUG-------GGGCUGUUGUcg -5'
28928 3' -54 NC_006146.1 + 114514 0.73 0.666278
Target:  5'- cGCGagcGGCCACGcuuaCCCGGCGGCGGUg -3'
miRNA:   3'- -UGC---CCGGUGUuuugGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 123921 0.73 0.676506
Target:  5'- gACGGG-CGCAAu-UCCUGGCGGCGGCc -3'
miRNA:   3'- -UGCCCgGUGUUuuGGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 64204 0.73 0.676506
Target:  5'- -aGGuGUCGCGGAGCUCCGGCAGgaGGCa -3'
miRNA:   3'- ugCC-CGGUGUUUUGGGGCUGUUg-UCG- -5'
28928 3' -54 NC_006146.1 + 45793 0.73 0.666278
Target:  5'- uACuGGCCACGuuuaccgccGACCCCGGCGACAc- -3'
miRNA:   3'- -UGcCCGGUGUu--------UUGGGGCUGUUGUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.