Results 81 - 100 of 472 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28928 | 3' | -54 | NC_006146.1 | + | 78649 | 0.73 | 0.696844 |
Target: 5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3' miRNA: 3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 78589 | 0.73 | 0.696844 |
Target: 5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3' miRNA: 3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 161836 | 0.73 | 0.666278 |
Target: 5'- uUGGGCCAC---GCCCCGugGGagacCGGCu -3' miRNA: 3'- uGCCCGGUGuuuUGGGGCugUU----GUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 71831 | 0.73 | 0.666278 |
Target: 5'- uGCGGGCCcuccaccacuACGGcACCCCGACAcccGCcgGGCc -3' miRNA: 3'- -UGCCCGG----------UGUUuUGGGGCUGU---UG--UCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 45793 | 0.73 | 0.666278 |
Target: 5'- uACuGGCCACGuuuaccgccGACCCCGGCGACAc- -3' miRNA: 3'- -UGcCCGGUGUu--------UUGGGGCUGUUGUcg -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 56509 | 0.73 | 0.696844 |
Target: 5'- uCGGGCCGCGGggUCgucgCCGGCcaucAGCAGCu -3' miRNA: 3'- uGCCCGGUGUUuuGG----GGCUG----UUGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 45414 | 0.73 | 0.696844 |
Target: 5'- gUGGGCCagcGCGAGGCCCCGGC--CGGg -3' miRNA: 3'- uGCCCGG---UGUUUUGGGGCUGuuGUCg -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 78619 | 0.73 | 0.696844 |
Target: 5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3' miRNA: 3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 78887 | 0.73 | 0.696844 |
Target: 5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3' miRNA: 3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 78799 | 0.73 | 0.696844 |
Target: 5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3' miRNA: 3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 147152 | 0.73 | 0.696844 |
Target: 5'- --cGGCCGCGGcaguugaCCCGGCGGCGGCg -3' miRNA: 3'- ugcCCGGUGUUuug----GGGCUGUUGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 10823 | 0.73 | 0.696844 |
Target: 5'- cAUGGGCCAUGAGauagGCUCCGAagcCAGcCAGCa -3' miRNA: 3'- -UGCCCGGUGUUU----UGGGGCU---GUU-GUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 147741 | 0.73 | 0.696844 |
Target: 5'- aGCGGGCCGCGAgcGACUCUGuGCA--AGCg -3' miRNA: 3'- -UGCCCGGUGUU--UUGGGGC-UGUugUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 78857 | 0.73 | 0.696844 |
Target: 5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3' miRNA: 3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 78739 | 0.73 | 0.696844 |
Target: 5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3' miRNA: 3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 165969 | 0.73 | 0.705929 |
Target: 5'- cCGGGgCACAGAGCacggccaCCCGACAGCGa- -3' miRNA: 3'- uGCCCgGUGUUUUG-------GGGCUGUUGUcg -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 156568 | 0.73 | 0.676506 |
Target: 5'- -aGGGCCGCAAcGGCCCUG-CGugAGUu -3' miRNA: 3'- ugCCCGGUGUU-UUGGGGCuGUugUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 78769 | 0.73 | 0.696844 |
Target: 5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3' miRNA: 3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 114092 | 0.72 | 0.736788 |
Target: 5'- -gGGGCCA-GAAGCCCCGcccgccaGACGGCc -3' miRNA: 3'- ugCCCGGUgUUUUGGGGCug-----UUGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 121876 | 0.72 | 0.726917 |
Target: 5'- uCGGGCCGC---GCCCCGGagaacgcccuGCGGCu -3' miRNA: 3'- uGCCCGGUGuuuUGGGGCUgu--------UGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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