Results 61 - 80 of 472 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28928 | 3' | -54 | NC_006146.1 | + | 11632 | 0.74 | 0.614886 |
Target: 5'- -aGGGCCcCGAGGCCCgCGugG-CGGCg -3' miRNA: 3'- ugCCCGGuGUUUUGGG-GCugUuGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 47633 | 0.74 | 0.62517 |
Target: 5'- -aGGGCCACGAGccguCUCUGGCcGCGGCc -3' miRNA: 3'- ugCCCGGUGUUUu---GGGGCUGuUGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 149215 | 0.74 | 0.62517 |
Target: 5'- -aGGGCCugAAAgGCCCCGGCGcCuGGCu -3' miRNA: 3'- ugCCCGGugUUU-UGGGGCUGUuG-UCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 155371 | 0.74 | 0.62517 |
Target: 5'- -aGGGCCugAAAgGCCCCGGCGcCuGGCu -3' miRNA: 3'- ugCCCGGugUUU-UGGGGCUGUuG-UCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 158450 | 0.74 | 0.62517 |
Target: 5'- -aGGGCCugAAAgGCCCCGGCGcCuGGCu -3' miRNA: 3'- ugCCCGGugUUU-UGGGGCUGUuG-UCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 152293 | 0.74 | 0.62517 |
Target: 5'- -aGGGCCugAAAgGCCCCGGCGcCuGGCu -3' miRNA: 3'- ugCCCGGugUUU-UGGGGCUGUuG-UCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 146137 | 0.74 | 0.62517 |
Target: 5'- -aGGGCCugAAAgGCCCCGGCGcCuGGCu -3' miRNA: 3'- ugCCCGGugUUU-UGGGGCUGUuG-UCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 143059 | 0.74 | 0.62517 |
Target: 5'- -aGGGCCugAAAgGCCCCGGCGcCuGGCu -3' miRNA: 3'- ugCCCGGugUUU-UGGGGCUGUuG-UCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 146863 | 0.74 | 0.645746 |
Target: 5'- -gGGGCCGCGucACCCCGcCAGgGGg -3' miRNA: 3'- ugCCCGGUGUuuUGGGGCuGUUgUCg -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 58555 | 0.74 | 0.645746 |
Target: 5'- gGCGGcCUACAugGAGCCCUGGC-ACAGCc -3' miRNA: 3'- -UGCCcGGUGU--UUUGGGGCUGuUGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 137756 | 0.74 | 0.656022 |
Target: 5'- cCGGGCCACc---CCCCacccggagcggGGCAGCGGCc -3' miRNA: 3'- uGCCCGGUGuuuuGGGG-----------CUGUUGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 126135 | 0.74 | 0.656022 |
Target: 5'- cUGGGuuccccgcCCGCcGGGCCCCGACAaccACAGCc -3' miRNA: 3'- uGCCC--------GGUGuUUUGGGGCUGU---UGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 93804 | 0.74 | 0.656022 |
Target: 5'- aAUGGGCCAgGuucuuCCCgGACAgaGCGGCa -3' miRNA: 3'- -UGCCCGGUgUuuu--GGGgCUGU--UGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 137633 | 0.74 | 0.656022 |
Target: 5'- cCGGGCCACc---CCCCacccggagcggGGCAGCGGCc -3' miRNA: 3'- uGCCCGGUGuuuuGGGG-----------CUGUUGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 161836 | 0.73 | 0.666278 |
Target: 5'- uUGGGCCAC---GCCCCGugGGagacCGGCu -3' miRNA: 3'- uGCCCGGUGuuuUGGGGCugUU----GUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 45793 | 0.73 | 0.666278 |
Target: 5'- uACuGGCCACGuuuaccgccGACCCCGGCGACAc- -3' miRNA: 3'- -UGcCCGGUGUu--------UUGGGGCUGUUGUcg -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 71831 | 0.73 | 0.666278 |
Target: 5'- uGCGGGCCcuccaccacuACGGcACCCCGACAcccGCcgGGCc -3' miRNA: 3'- -UGCCCGG----------UGUUuUGGGGCUGU---UG--UCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 114514 | 0.73 | 0.666278 |
Target: 5'- cGCGagcGGCCACGcuuaCCCGGCGGCGGUg -3' miRNA: 3'- -UGC---CCGGUGUuuugGGGCUGUUGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 64204 | 0.73 | 0.676506 |
Target: 5'- -aGGuGUCGCGGAGCUCCGGCAGgaGGCa -3' miRNA: 3'- ugCC-CGGUGUUUUGGGGCUGUUg-UCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 123921 | 0.73 | 0.676506 |
Target: 5'- gACGGG-CGCAAu-UCCUGGCGGCGGCc -3' miRNA: 3'- -UGCCCgGUGUUuuGGGGCUGUUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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