miRNA display CGI


Results 81 - 100 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 3' -54 NC_006146.1 + 123921 0.73 0.676506
Target:  5'- gACGGG-CGCAAu-UCCUGGCGGCGGCc -3'
miRNA:   3'- -UGCCCgGUGUUuuGGGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 4876 0.73 0.696844
Target:  5'- -gGGGCCACAGGcacCCCCGAugcccaCAACcGCa -3'
miRNA:   3'- ugCCCGGUGUUUu--GGGGCU------GUUGuCG- -5'
28928 3' -54 NC_006146.1 + 78739 0.73 0.696844
Target:  5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3'
miRNA:   3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 56509 0.73 0.696844
Target:  5'- uCGGGCCGCGGggUCgucgCCGGCcaucAGCAGCu -3'
miRNA:   3'- uGCCCGGUGUUuuGG----GGCUG----UUGUCG- -5'
28928 3' -54 NC_006146.1 + 78709 0.73 0.696844
Target:  5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3'
miRNA:   3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 78679 0.73 0.696844
Target:  5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3'
miRNA:   3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 78649 0.73 0.696844
Target:  5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3'
miRNA:   3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 78619 0.73 0.696844
Target:  5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3'
miRNA:   3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 78589 0.73 0.696844
Target:  5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3'
miRNA:   3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 45414 0.73 0.696844
Target:  5'- gUGGGCCagcGCGAGGCCCCGGC--CGGg -3'
miRNA:   3'- uGCCCGG---UGUUUUGGGGCUGuuGUCg -5'
28928 3' -54 NC_006146.1 + 147152 0.73 0.696844
Target:  5'- --cGGCCGCGGcaguugaCCCGGCGGCGGCg -3'
miRNA:   3'- ugcCCGGUGUUuug----GGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 78887 0.73 0.696844
Target:  5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3'
miRNA:   3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 147741 0.73 0.696844
Target:  5'- aGCGGGCCGCGAgcGACUCUGuGCA--AGCg -3'
miRNA:   3'- -UGCCCGGUGUU--UUGGGGC-UGUugUCG- -5'
28928 3' -54 NC_006146.1 + 78799 0.73 0.696844
Target:  5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3'
miRNA:   3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 78769 0.73 0.696844
Target:  5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3'
miRNA:   3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 10823 0.73 0.696844
Target:  5'- cAUGGGCCAUGAGauagGCUCCGAagcCAGcCAGCa -3'
miRNA:   3'- -UGCCCGGUGUUU----UGGGGCU---GUU-GUCG- -5'
28928 3' -54 NC_006146.1 + 78857 0.73 0.696844
Target:  5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3'
miRNA:   3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 165969 0.73 0.705929
Target:  5'- cCGGGgCACAGAGCacggccaCCCGACAGCGa- -3'
miRNA:   3'- uGCCCgGUGUUUUG-------GGGCUGUUGUcg -5'
28928 3' -54 NC_006146.1 + 16796 0.72 0.714963
Target:  5'- uCGGGuCCACcaggccggccggaGGGACCCCGGCAGCccgggagAGCc -3'
miRNA:   3'- uGCCC-GGUG-------------UUUUGGGGCUGUUG-------UCG- -5'
28928 3' -54 NC_006146.1 + 13718 0.72 0.714963
Target:  5'- uCGGGuCCACcaggccggccggaGGGACCCCGGCAGCccgggagAGCc -3'
miRNA:   3'- uGCCC-GGUG-------------UUUUGGGGCUGUUG-------UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.