miRNA display CGI


Results 61 - 80 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 3' -54 NC_006146.1 + 144743 0.66 0.965248
Target:  5'- cCGGGCCGcCGGggUCCCucCGGcCGGCc -3'
miRNA:   3'- uGCCCGGU-GUUuuGGGGcuGUU-GUCG- -5'
28928 3' -54 NC_006146.1 + 128972 0.66 0.965248
Target:  5'- cACGGGCCuCGGGuucuGCCUCaGCAagggggggucGCAGCu -3'
miRNA:   3'- -UGCCCGGuGUUU----UGGGGcUGU----------UGUCG- -5'
28928 3' -54 NC_006146.1 + 147821 0.66 0.965248
Target:  5'- cCGGGCCGcCGGggUCCCucCGGcCGGCc -3'
miRNA:   3'- uGCCCGGU-GUUuuGGGGcuGUU-GUCG- -5'
28928 3' -54 NC_006146.1 + 150899 0.66 0.965248
Target:  5'- cCGGGCCGcCGGggUCCCucCGGcCGGCc -3'
miRNA:   3'- uGCCCGGU-GUUuuGGGGcuGUU-GUCG- -5'
28928 3' -54 NC_006146.1 + 153977 0.66 0.965248
Target:  5'- cCGGGCCGcCGGggUCCCucCGGcCGGCc -3'
miRNA:   3'- uGCCCGGU-GUUuuGGGGcuGUU-GUCG- -5'
28928 3' -54 NC_006146.1 + 157055 0.66 0.965248
Target:  5'- cCGGGCCGcCGGggUCCCucCGGcCGGCc -3'
miRNA:   3'- uGCCCGGU-GUUuuGGGGcuGUU-GUCG- -5'
28928 3' -54 NC_006146.1 + 24690 0.66 0.965248
Target:  5'- cAUGGccGCCGCuu-ACCCCGGaggagcccauGCAGCa -3'
miRNA:   3'- -UGCC--CGGUGuuuUGGGGCUgu--------UGUCG- -5'
28928 3' -54 NC_006146.1 + 153317 0.66 0.964921
Target:  5'- cCGGGCCAgGucGCCCa-GCAuccgauugaucugGCGGCg -3'
miRNA:   3'- uGCCCGGUgUuuUGGGgcUGU-------------UGUCG- -5'
28928 3' -54 NC_006146.1 + 4082 0.66 0.961874
Target:  5'- cCGGGCCGCG-----UCGACAGCAccGCg -3'
miRNA:   3'- uGCCCGGUGUuuuggGGCUGUUGU--CG- -5'
28928 3' -54 NC_006146.1 + 146826 0.66 0.961874
Target:  5'- gGCGaGGCCGCGccagcguaGAGCCCgGGCcu-GGCu -3'
miRNA:   3'- -UGC-CCGGUGU--------UUUGGGgCUGuugUCG- -5'
28928 3' -54 NC_006146.1 + 156531 0.66 0.961874
Target:  5'- aGCGGGagGCGAGAUCCCGGgacccgacccCAcCAGCn -3'
miRNA:   3'- -UGCCCggUGUUUUGGGGCU----------GUuGUCG- -5'
28928 3' -54 NC_006146.1 + 87918 0.66 0.961874
Target:  5'- -aGcGGCCugGGuuuCCCCGGCGGCuuuGUc -3'
miRNA:   3'- ugC-CCGGugUUuu-GGGGCUGUUGu--CG- -5'
28928 3' -54 NC_006146.1 + 27391 0.66 0.961874
Target:  5'- cCGGGgCACAGAcgcguggcaucACCCCGAgaGACgAGUu -3'
miRNA:   3'- uGCCCgGUGUUU-----------UGGGGCUg-UUG-UCG- -5'
28928 3' -54 NC_006146.1 + 76894 0.66 0.961874
Target:  5'- cCGGGCCGCAcguggGAGCCagaggugaCCGcgggGCuGCAGCc -3'
miRNA:   3'- uGCCCGGUGU-----UUUGG--------GGC----UGuUGUCG- -5'
28928 3' -54 NC_006146.1 + 101681 0.66 0.961874
Target:  5'- aACGGGCUACGGgcGGCgCUagagggggggaGAgAGCAGCg -3'
miRNA:   3'- -UGCCCGGUGUU--UUGgGG-----------CUgUUGUCG- -5'
28928 3' -54 NC_006146.1 + 143574 0.66 0.961874
Target:  5'- cCGGGCCugGAAGgUCCGGUGGCuucGCu -3'
miRNA:   3'- uGCCCGGugUUUUgGGGCUGUUGu--CG- -5'
28928 3' -54 NC_006146.1 + 149729 0.66 0.961874
Target:  5'- cCGGGCCugGAAGgUCCGGUGGCuucGCu -3'
miRNA:   3'- uGCCCGGugUUUUgGGGCUGUUGu--CG- -5'
28928 3' -54 NC_006146.1 + 165658 0.66 0.961874
Target:  5'- uUGGGuccgugaccCCACA--GCCCCGAgGcCGGCa -3'
miRNA:   3'- uGCCC---------GGUGUuuUGGGGCUgUuGUCG- -5'
28928 3' -54 NC_006146.1 + 99788 0.66 0.961874
Target:  5'- gGCGGGgCGCAGGugUCUcggaagGGCAcCGGCg -3'
miRNA:   3'- -UGCCCgGUGUUUugGGG------CUGUuGUCG- -5'
28928 3' -54 NC_006146.1 + 146652 0.66 0.961874
Target:  5'- cCGGGCCugGAAGgUCCGGUGGCuucGCu -3'
miRNA:   3'- uGCCCGGugUUUUgGGGCUGUUGu--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.