miRNA display CGI


Results 61 - 80 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 3' -54 NC_006146.1 + 17443 0.7 0.844631
Target:  5'- gGCGGGCCuguCAGAcaGCCCUGuCuagggccgggagaGGCAGCc -3'
miRNA:   3'- -UGCCCGGu--GUUU--UGGGGCuG-------------UUGUCG- -5'
28928 3' -54 NC_006146.1 + 18548 0.68 0.915396
Target:  5'- cACGGGCUAC-AGGCCCUGcCucucccucuACAGUc -3'
miRNA:   3'- -UGCCCGGUGuUUUGGGGCuGu--------UGUCG- -5'
28928 3' -54 NC_006146.1 + 18610 0.66 0.958279
Target:  5'- aGCGGGCgACcAAACCUUcgGugGcCAGCa -3'
miRNA:   3'- -UGCCCGgUGuUUUGGGG--CugUuGUCG- -5'
28928 3' -54 NC_006146.1 + 18634 0.66 0.971356
Target:  5'- uCGGGCCcCucuGGACUCCGGCuuccccauccCAGCc -3'
miRNA:   3'- uGCCCGGuGu--UUUGGGGCUGuu--------GUCG- -5'
28928 3' -54 NC_006146.1 + 19301 0.67 0.954458
Target:  5'- aGCGGGUCACGcgccGCUCCaucaugGGCuACGGCa -3'
miRNA:   3'- -UGCCCGGUGUuu--UGGGG------CUGuUGUCG- -5'
28928 3' -54 NC_006146.1 + 19509 0.66 0.968407
Target:  5'- cCGcGCCAUc---CCCCGccuGCAGCAGCg -3'
miRNA:   3'- uGCcCGGUGuuuuGGGGC---UGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 19536 0.68 0.908822
Target:  5'- -gGGGCC-CAGGGCCCCuaguccaGAgGACGGa -3'
miRNA:   3'- ugCCCGGuGUUUUGGGG-------CUgUUGUCg -5'
28928 3' -54 NC_006146.1 + 19588 0.7 0.828913
Target:  5'- cCGGGUCcCAGgccagccggaggGACCCCGGCAGCccgGGUg -3'
miRNA:   3'- uGCCCGGuGUU------------UUGGGGCUGUUG---UCG- -5'
28928 3' -54 NC_006146.1 + 19874 0.72 0.714963
Target:  5'- uCGGGuCCACcaggccggccggaGGGACCCCGGCAGCccgggagAGCc -3'
miRNA:   3'- uGCCC-GGUG-------------UUUUGGGGCUGUUG-------UCG- -5'
28928 3' -54 NC_006146.1 + 19980 0.69 0.890118
Target:  5'- uGCGaGGUCAgGAGGCCCC-ACGAC-GCc -3'
miRNA:   3'- -UGC-CCGGUgUUUUGGGGcUGUUGuCG- -5'
28928 3' -54 NC_006146.1 + 19999 0.72 0.736788
Target:  5'- gGCcGGCCGgaGGGACCCCGGCGGCccGGUg -3'
miRNA:   3'- -UGcCCGGUg-UUUUGGGGCUGUUG--UCG- -5'
28928 3' -54 NC_006146.1 + 20521 0.7 0.844631
Target:  5'- gGCGGGCCuguCAGAcaGCCCUGuCuagggccgggagaGGCAGCc -3'
miRNA:   3'- -UGCCCGGu--GUUU--UGGGGCuG-------------UUGUCG- -5'
28928 3' -54 NC_006146.1 + 20893 0.68 0.915396
Target:  5'- aGCGGGCCAaggccuucgugGAGGCCCUGAgucCGGCc -3'
miRNA:   3'- -UGCCCGGUg----------UUUUGGGGCUguuGUCG- -5'
28928 3' -54 NC_006146.1 + 20964 0.68 0.926603
Target:  5'- -gGGcGCCcCucAACCCCGAgGGCAGg -3'
miRNA:   3'- ugCC-CGGuGuuUUGGGGCUgUUGUCg -5'
28928 3' -54 NC_006146.1 + 21626 0.68 0.915396
Target:  5'- cACGGGCUAC-AGGCCCUGcCucucccucuACAGUc -3'
miRNA:   3'- -UGCCCGGUGuUUUGGGGCuGu--------UGUCG- -5'
28928 3' -54 NC_006146.1 + 21712 0.66 0.971356
Target:  5'- uCGGGCCcCucuGGACUCCGGCuuccccauccCAGCc -3'
miRNA:   3'- uGCCCGGuGu--UUUGGGGCUGuu--------GUCG- -5'
28928 3' -54 NC_006146.1 + 22614 0.68 0.908822
Target:  5'- -gGGGCC-CAGGGCCCCuaguccaGAgGACGGa -3'
miRNA:   3'- ugCCCGGuGUUUUGGGG-------CUgUUGUCg -5'
28928 3' -54 NC_006146.1 + 22666 0.7 0.828913
Target:  5'- cCGGGUCcCAGgccagccggaggGACCCCGGCAGCccgGGUg -3'
miRNA:   3'- uGCCCGGuGUU------------UUGGGGCUGUUG---UCG- -5'
28928 3' -54 NC_006146.1 + 22706 0.67 0.950408
Target:  5'- cUGGGCCugAuguGCUCCGucuggacgcACGugGGCa -3'
miRNA:   3'- uGCCCGGugUuu-UGGGGC---------UGUugUCG- -5'
28928 3' -54 NC_006146.1 + 22759 0.69 0.89679
Target:  5'- cCGGGCCcugaccagcACGAAGCCCaugCGGCAcuccaacaggACAGUg -3'
miRNA:   3'- uGCCCGG---------UGUUUUGGG---GCUGU----------UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.