miRNA display CGI


Results 81 - 100 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 3' -54 NC_006146.1 + 22963 0.72 0.735805
Target:  5'- gGCcGGCCGgaGGGACCCCGGCAGCccgggagAGCc -3'
miRNA:   3'- -UGcCCGGUg-UUUUGGGGCUGUUG-------UCG- -5'
28928 3' -54 NC_006146.1 + 23077 0.72 0.736788
Target:  5'- gGCcGGCCGgaGGGACCCCGGCGGCccGGUg -3'
miRNA:   3'- -UGcCCGGUg-UUUUGGGGCUGUUG--UCG- -5'
28928 3' -54 NC_006146.1 + 23461 0.69 0.868744
Target:  5'- --cGGCCuACGAGGCCCUGGCcgUGGCc -3'
miRNA:   3'- ugcCCGG-UGUUUUGGGGCUGuuGUCG- -5'
28928 3' -54 NC_006146.1 + 23599 0.7 0.844631
Target:  5'- gGCGGGCCuguCAGAcaGCCCUGuCuagggccgggagaGGCAGCc -3'
miRNA:   3'- -UGCCCGGu--GUUU--UGGGGCuG-------------UUGUCG- -5'
28928 3' -54 NC_006146.1 + 24690 0.66 0.965248
Target:  5'- cAUGGccGCCGCuu-ACCCCGGaggagcccauGCAGCa -3'
miRNA:   3'- -UGCC--CGGUGuuuUGGGGCUgu--------UGUCG- -5'
28928 3' -54 NC_006146.1 + 24704 0.68 0.915396
Target:  5'- cACGGGCUAC-AGGCCCUGcCucucccucuACAGUc -3'
miRNA:   3'- -UGCCCGGUGuUUUGGGGCuGu--------UGUCG- -5'
28928 3' -54 NC_006146.1 + 24790 0.66 0.971356
Target:  5'- uCGGGCCcCucuGGACUCCGGCuuccccauccCAGCc -3'
miRNA:   3'- uGCCCGGuGu--UUUGGGGCUGuu--------GUCG- -5'
28928 3' -54 NC_006146.1 + 25399 0.68 0.92112
Target:  5'- -aGGGCUACGucaGAGuCUCCGugGACAcGCc -3'
miRNA:   3'- ugCCCGGUGU---UUU-GGGGCugUUGU-CG- -5'
28928 3' -54 NC_006146.1 + 25692 0.68 0.908822
Target:  5'- -gGGGCC-CAGGGCCCCuaguccaGAgGACGGa -3'
miRNA:   3'- ugCCCGGuGUUUUGGGG-------CUgUUGUCg -5'
28928 3' -54 NC_006146.1 + 25744 0.7 0.828913
Target:  5'- cCGGGUCcCAGgccagccggaggGACCCCGGCAGCccgGGUg -3'
miRNA:   3'- uGCCCGGuGUU------------UUGGGGCUGUUG---UCG- -5'
28928 3' -54 NC_006146.1 + 26029 0.72 0.714963
Target:  5'- uCGGGuCCACcaggccggccggaGGGACCCCGGCAGCccgggagAGCc -3'
miRNA:   3'- uGCCC-GGUG-------------UUUUGGGGCUGUUG-------UCG- -5'
28928 3' -54 NC_006146.1 + 26155 0.72 0.736788
Target:  5'- gGCcGGCCGgaGGGACCCCGGCGGCccGGUg -3'
miRNA:   3'- -UGcCCGGUg-UUUUGGGGCUGUUG--UCG- -5'
28928 3' -54 NC_006146.1 + 26677 0.7 0.844631
Target:  5'- gGCGGGCCuguCAGAcaGCCCUGuCuagggccgggagaGGCAGCc -3'
miRNA:   3'- -UGCCCGGu--GUUU--UGGGGCuG-------------UUGUCG- -5'
28928 3' -54 NC_006146.1 + 27352 0.68 0.915396
Target:  5'- gUGGcGCgGCAAGGCCggggggcgucUgGACAGCAGCa -3'
miRNA:   3'- uGCC-CGgUGUUUUGG----------GgCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 27391 0.66 0.961874
Target:  5'- cCGGGgCACAGAcgcguggcaucACCCCGAgaGACgAGUu -3'
miRNA:   3'- uGCCCgGUGUUU-----------UGGGGCUg-UUG-UCG- -5'
28928 3' -54 NC_006146.1 + 27782 0.68 0.915396
Target:  5'- cACGGGCUAC-AGGCCCUGcCucucccucuACAGUc -3'
miRNA:   3'- -UGCCCGGUGuUUUGGGGCuGu--------UGUCG- -5'
28928 3' -54 NC_006146.1 + 27868 0.66 0.971356
Target:  5'- uCGGGCCcCucuGGACUCCGGCuuccccauccCAGCc -3'
miRNA:   3'- uGCCCGGuGu--UUUGGGGCUGuu--------GUCG- -5'
28928 3' -54 NC_006146.1 + 27930 0.67 0.950408
Target:  5'- -aGGGCUaggGCGGAACCCCcuGGCAu--GCa -3'
miRNA:   3'- ugCCCGG---UGUUUUGGGG--CUGUuguCG- -5'
28928 3' -54 NC_006146.1 + 28770 0.68 0.908822
Target:  5'- -gGGGCC-CAGGGCCCCuaguccaGAgGACGGa -3'
miRNA:   3'- ugCCCGGuGUUUUGGGG-------CUgUUGUCg -5'
28928 3' -54 NC_006146.1 + 28822 0.7 0.828913
Target:  5'- cCGGGUCcCAGgccagccggaggGACCCCGGCAGCccgGGUg -3'
miRNA:   3'- uGCCCGGuGUU------------UUGGGGCUGUUG---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.