miRNA display CGI


Results 21 - 40 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 3' -54 NC_006146.1 + 161836 0.73 0.666278
Target:  5'- uUGGGCCAC---GCCCCGugGGagacCGGCu -3'
miRNA:   3'- uGCCCGGUGuuuUGGGGCugUU----GUCG- -5'
28928 3' -54 NC_006146.1 + 161234 0.71 0.784577
Target:  5'- cAC-GGCCaACAucuCCCaCGACGGCAGCu -3'
miRNA:   3'- -UGcCCGG-UGUuuuGGG-GCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 160162 0.66 0.968407
Target:  5'- ---aGCCGCAugGCCCCGGCu--GGCu -3'
miRNA:   3'- ugccCGGUGUuuUGGGGCUGuugUCG- -5'
28928 3' -54 NC_006146.1 + 159278 0.79 0.369424
Target:  5'- cGCGGGCCuCGGGGCCCUcGCAGuCGGCa -3'
miRNA:   3'- -UGCCCGGuGUUUUGGGGcUGUU-GUCG- -5'
28928 3' -54 NC_006146.1 + 158590 0.67 0.950408
Target:  5'- gGCGGGCCugAA-GCCCgGGuugaGGCg -3'
miRNA:   3'- -UGCCCGGugUUuUGGGgCUguugUCG- -5'
28928 3' -54 NC_006146.1 + 158450 0.74 0.62517
Target:  5'- -aGGGCCugAAAgGCCCCGGCGcCuGGCu -3'
miRNA:   3'- ugCCCGGugUUU-UGGGGCUGUuG-UCG- -5'
28928 3' -54 NC_006146.1 + 158129 0.67 0.944792
Target:  5'- -aGGGCCGCGuccAGgUCCGGCAGgucacaggugggcuCAGCg -3'
miRNA:   3'- ugCCCGGUGUu--UUgGGGCUGUU--------------GUCG- -5'
28928 3' -54 NC_006146.1 + 157533 0.79 0.361352
Target:  5'- -gGGGCC-CuGGGCCCCGAgGGCGGCu -3'
miRNA:   3'- ugCCCGGuGuUUUGGGGCUgUUGUCG- -5'
28928 3' -54 NC_006146.1 + 157492 0.68 0.92112
Target:  5'- gGCGGGCCuuGCAGA--CCUGGCugagGCAGUc -3'
miRNA:   3'- -UGCCCGG--UGUUUugGGGCUGu---UGUCG- -5'
28928 3' -54 NC_006146.1 + 157055 0.66 0.965248
Target:  5'- cCGGGCCGcCGGggUCCCucCGGcCGGCc -3'
miRNA:   3'- uGCCCGGU-GUUuuGGGGcuGUU-GUCG- -5'
28928 3' -54 NC_006146.1 + 156568 0.73 0.676506
Target:  5'- -aGGGCCGCAAcGGCCCUG-CGugAGUu -3'
miRNA:   3'- ugCCCGGUGUU-UUGGGGCuGUugUCG- -5'
28928 3' -54 NC_006146.1 + 156531 0.66 0.961874
Target:  5'- aGCGGGagGCGAGAUCCCGGgacccgacccCAcCAGCn -3'
miRNA:   3'- -UGCCCggUGUUUUGGGGCU----------GUuGUCG- -5'
28928 3' -54 NC_006146.1 + 156325 0.72 0.736788
Target:  5'- cGCGGGUC-CGGGauggggcucacGCCCCGAaagcggccCAGCAGCu -3'
miRNA:   3'- -UGCCCGGuGUUU-----------UGGGGCU--------GUUGUCG- -5'
28928 3' -54 NC_006146.1 + 156230 0.69 0.896133
Target:  5'- cGCGGGCCcccucggccguggACGGggUgCCGugGuuggGCAGCa -3'
miRNA:   3'- -UGCCCGG-------------UGUUuuGgGGCugU----UGUCG- -5'
28928 3' -54 NC_006146.1 + 156077 0.67 0.941603
Target:  5'- cCGGGCC-CGAGACCgugcccuccuCCGGCc-CGGCc -3'
miRNA:   3'- uGCCCGGuGUUUUGG----------GGCUGuuGUCG- -5'
28928 3' -54 NC_006146.1 + 155885 0.66 0.961874
Target:  5'- cCGGGCCugGAAGgUCCGGUGGCuucGCu -3'
miRNA:   3'- uGCCCGGugUUUUgGGGCUGUUGu--CG- -5'
28928 3' -54 NC_006146.1 + 155870 0.67 0.954458
Target:  5'- gGCGGGCCcuggccagGCGccccuCCCUGGCAAacagGGCa -3'
miRNA:   3'- -UGCCCGG--------UGUuuu--GGGGCUGUUg---UCG- -5'
28928 3' -54 NC_006146.1 + 155564 0.72 0.765813
Target:  5'- cCGGGCUcgcGCGGGGCgCCCGcCAGgGGCa -3'
miRNA:   3'- uGCCCGG---UGUUUUG-GGGCuGUUgUCG- -5'
28928 3' -54 NC_006146.1 + 155511 0.67 0.950408
Target:  5'- gGCGGGCCugAA-GCCCgGGuugaGGCg -3'
miRNA:   3'- -UGCCCGGugUUuUGGGgCUguugUCG- -5'
28928 3' -54 NC_006146.1 + 155371 0.74 0.62517
Target:  5'- -aGGGCCugAAAgGCCCCGGCGcCuGGCu -3'
miRNA:   3'- ugCCCGGugUUU-UGGGGCUGUuG-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.