miRNA display CGI


Results 61 - 80 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 3' -54 NC_006146.1 + 147152 0.73 0.696844
Target:  5'- --cGGCCGCGGcaguugaCCCGGCGGCGGCg -3'
miRNA:   3'- ugcCCGGUGUUuug----GGGCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 146863 0.74 0.645746
Target:  5'- -gGGGCCGCGucACCCCGcCAGgGGg -3'
miRNA:   3'- ugCCCGGUGUuuUGGGGCuGUUgUCg -5'
28928 3' -54 NC_006146.1 + 146826 0.66 0.961874
Target:  5'- gGCGaGGCCGCGccagcguaGAGCCCgGGCcu-GGCu -3'
miRNA:   3'- -UGC-CCGGUGU--------UUUGGGgCUGuugUCG- -5'
28928 3' -54 NC_006146.1 + 146652 0.66 0.961874
Target:  5'- cCGGGCCugGAAGgUCCGGUGGCuucGCu -3'
miRNA:   3'- uGCCCGGugUUUUgGGGCUGUUGu--CG- -5'
28928 3' -54 NC_006146.1 + 146277 0.67 0.950408
Target:  5'- gGCGGGCCugAA-GCCCgGGuugaGGCg -3'
miRNA:   3'- -UGCCCGGugUUuUGGGgCUguugUCG- -5'
28928 3' -54 NC_006146.1 + 146137 0.74 0.62517
Target:  5'- -aGGGCCugAAAgGCCCCGGCGcCuGGCu -3'
miRNA:   3'- ugCCCGGugUUU-UGGGGCUGUuG-UCG- -5'
28928 3' -54 NC_006146.1 + 145221 0.79 0.361352
Target:  5'- -gGGGCC-CuGGGCCCCGAgGGCGGCu -3'
miRNA:   3'- ugCCCGGuGuUUUGGGGCUgUUGUCG- -5'
28928 3' -54 NC_006146.1 + 144743 0.66 0.965248
Target:  5'- cCGGGCCGcCGGggUCCCucCGGcCGGCc -3'
miRNA:   3'- uGCCCGGU-GUUuuGGGGcuGUU-GUCG- -5'
28928 3' -54 NC_006146.1 + 143574 0.66 0.961874
Target:  5'- cCGGGCCugGAAGgUCCGGUGGCuucGCu -3'
miRNA:   3'- uGCCCGGugUUUUgGGGCUGUUGu--CG- -5'
28928 3' -54 NC_006146.1 + 143199 0.67 0.950408
Target:  5'- gGCGGGCCugAA-GCCCgGGuugaGGCg -3'
miRNA:   3'- -UGCCCGGugUUuUGGGgCUguugUCG- -5'
28928 3' -54 NC_006146.1 + 143059 0.74 0.62517
Target:  5'- -aGGGCCugAAAgGCCCCGGCGcCuGGCu -3'
miRNA:   3'- ugCCCGGugUUU-UGGGGCUGUuG-UCG- -5'
28928 3' -54 NC_006146.1 + 142820 0.71 0.784577
Target:  5'- cCGGGCCuCAAGaauGCCCCGAagcccAUGGCg -3'
miRNA:   3'- uGCCCGGuGUUU---UGGGGCUgu---UGUCG- -5'
28928 3' -54 NC_006146.1 + 142143 0.79 0.361352
Target:  5'- -gGGGCC-CuGGGCCCCGAgGGCGGCu -3'
miRNA:   3'- ugCCCGGuGuUUUGGGGCUgUUGUCG- -5'
28928 3' -54 NC_006146.1 + 141666 0.66 0.965248
Target:  5'- cCGGGCCGcCGGggUCCCucCGGcCGGCc -3'
miRNA:   3'- uGCCCGGU-GUUuuGGGGcuGUU-GUCG- -5'
28928 3' -54 NC_006146.1 + 140129 0.68 0.917714
Target:  5'- -gGGGUgGCGGAggugguggcggggguGCCCCGGguACAGUu -3'
miRNA:   3'- ugCCCGgUGUUU---------------UGGGGCUguUGUCG- -5'
28928 3' -54 NC_006146.1 + 138756 0.66 0.968407
Target:  5'- aGCGGccuGCCACG--GCCCUGGCuAACcuGCu -3'
miRNA:   3'- -UGCC---CGGUGUuuUGGGGCUG-UUGu-CG- -5'
28928 3' -54 NC_006146.1 + 137975 0.66 0.968407
Target:  5'- cCGGGCCuccCGGGGgCCCGGCGG-GGUg -3'
miRNA:   3'- uGCCCGGu--GUUUUgGGGCUGUUgUCG- -5'
28928 3' -54 NC_006146.1 + 137912 0.66 0.958279
Target:  5'- -nGGGCCG-GGggUUCCGGgGGCAGCc -3'
miRNA:   3'- ugCCCGGUgUUuuGGGGCUgUUGUCG- -5'
28928 3' -54 NC_006146.1 + 137885 0.78 0.438284
Target:  5'- cCGGGCCgGCAGGggguCCCCGugGACAGg -3'
miRNA:   3'- uGCCCGG-UGUUUu---GGGGCugUUGUCg -5'
28928 3' -54 NC_006146.1 + 137756 0.74 0.656022
Target:  5'- cCGGGCCACc---CCCCacccggagcggGGCAGCGGCc -3'
miRNA:   3'- uGCCCGGUGuuuuGGGG-----------CUGUUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.