miRNA display CGI


Results 81 - 100 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 3' -54 NC_006146.1 + 29233 0.72 0.736788
Target:  5'- gGCcGGCCGgaGGGACCCCGGCGGCccGGUg -3'
miRNA:   3'- -UGcCCGGUg-UUUUGGGGCUGUUG--UCG- -5'
28928 3' -54 NC_006146.1 + 81858 0.72 0.756246
Target:  5'- cCGGGCUACuggGAGCCUCGGCcuCAGa -3'
miRNA:   3'- uGCCCGGUGu--UUUGGGGCUGuuGUCg -5'
28928 3' -54 NC_006146.1 + 44888 0.72 0.765813
Target:  5'- cUGGGCuCGCGAugguACCuuGACGGcCGGCg -3'
miRNA:   3'- uGCCCG-GUGUUu---UGGggCUGUU-GUCG- -5'
28928 3' -54 NC_006146.1 + 95109 0.71 0.77526
Target:  5'- gGCGGcGCC-CGAGACgCCCGAguAgAGCc -3'
miRNA:   3'- -UGCC-CGGuGUUUUG-GGGCUguUgUCG- -5'
28928 3' -54 NC_006146.1 + 142820 0.71 0.784577
Target:  5'- cCGGGCCuCAAGaauGCCCCGAagcccAUGGCg -3'
miRNA:   3'- uGCCCGGuGUUU---UGGGGCUgu---UGUCG- -5'
28928 3' -54 NC_006146.1 + 16510 0.7 0.828913
Target:  5'- cCGGGUCcCAGgccagccggaggGACCCCGGCAGCccgGGUg -3'
miRNA:   3'- uGCCCGGuGUU------------UUGGGGCUGUUG---UCG- -5'
28928 3' -54 NC_006146.1 + 25744 0.7 0.828913
Target:  5'- cCGGGUCcCAGgccagccggaggGACCCCGGCAGCccgGGUg -3'
miRNA:   3'- uGCCCGGuGUU------------UUGGGGCUGUUG---UCG- -5'
28928 3' -54 NC_006146.1 + 78887 0.73 0.696844
Target:  5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3'
miRNA:   3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 78769 0.73 0.696844
Target:  5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3'
miRNA:   3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 78649 0.73 0.696844
Target:  5'- cCGGGCC-CGcc-CCCCaGCAGCAGCc -3'
miRNA:   3'- uGCCCGGuGUuuuGGGGcUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 49716 0.7 0.845439
Target:  5'- -gGGGCCACGGAAUgCCGGuCAugucgccuaggGCGGUg -3'
miRNA:   3'- ugCCCGGUGUUUUGgGGCU-GU-----------UGUCG- -5'
28928 3' -54 NC_006146.1 + 67312 0.7 0.861183
Target:  5'- cCGGGCCACGuccgcgcuGAgCCCGGCccaGGCc -3'
miRNA:   3'- uGCCCGGUGUu-------UUgGGGCUGuugUCG- -5'
28928 3' -54 NC_006146.1 + 33379 0.7 0.861183
Target:  5'- cCGGGCCGCu--GCCCCG-CucCGGg -3'
miRNA:   3'- uGCCCGGUGuuuUGGGGCuGuuGUCg -5'
28928 3' -54 NC_006146.1 + 130191 0.69 0.878968
Target:  5'- --aGGCCAgCAAcguCCCCGACAuccaaaggacgaaggACAGCg -3'
miRNA:   3'- ugcCCGGU-GUUuu-GGGGCUGU---------------UGUCG- -5'
28928 3' -54 NC_006146.1 + 82347 0.69 0.883217
Target:  5'- cCGGGUUACGGAGCaCCaCGGauGCAGCc -3'
miRNA:   3'- uGCCCGGUGUUUUG-GG-GCUguUGUCG- -5'
28928 3' -54 NC_006146.1 + 137885 0.78 0.438284
Target:  5'- cCGGGCCgGCAGGggguCCCCGugGACAGg -3'
miRNA:   3'- uGCCCGG-UGUUUu---GGGGCugUUGUCg -5'
28928 3' -54 NC_006146.1 + 128260 0.76 0.513926
Target:  5'- cUGGGcCCACuacguGAGGCCCaCGGCGGCGGCc -3'
miRNA:   3'- uGCCC-GGUG-----UUUUGGG-GCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 149838 0.75 0.553713
Target:  5'- gUGGGCgGcCAGGGCCUCGGCGaagcGCAGCg -3'
miRNA:   3'- uGCCCGgU-GUUUUGGGGCUGU----UGUCG- -5'
28928 3' -54 NC_006146.1 + 58555 0.74 0.645746
Target:  5'- gGCGGcCUACAugGAGCCCUGGC-ACAGCc -3'
miRNA:   3'- -UGCCcGGUGU--UUUGGGGCUGuUGUCG- -5'
28928 3' -54 NC_006146.1 + 56509 0.73 0.696844
Target:  5'- uCGGGCCGCGGggUCgucgCCGGCcaucAGCAGCu -3'
miRNA:   3'- uGCCCGGUGUUuuGG----GGCUG----UUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.