Results 21 - 40 of 472 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28928 | 3' | -54 | NC_006146.1 | + | 168354 | 0.66 | 0.971356 |
Target: 5'- gUGGGCUgaaGAAccagguGCCCCGaguaggugucucGCAGCGGCg -3' miRNA: 3'- uGCCCGGug-UUU------UGGGGC------------UGUUGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 54668 | 0.66 | 0.971356 |
Target: 5'- aGCuGGCC-CcGAAUCCCGcCGACAaGCg -3' miRNA: 3'- -UGcCCGGuGuUUUGGGGCuGUUGU-CG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 85395 | 0.66 | 0.971356 |
Target: 5'- cCGGGaCCgGCGuggaGGAUCCCGACGAggagacCAGCc -3' miRNA: 3'- uGCCC-GG-UGU----UUUGGGGCUGUU------GUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 67997 | 0.66 | 0.97107 |
Target: 5'- gGCGcagccacGCCACAcgGCCCCuGGCGucccccuGCGGCu -3' miRNA: 3'- -UGCc------CGGUGUuuUGGGG-CUGU-------UGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 3725 | 0.66 | 0.969611 |
Target: 5'- cCGGGCgCGCGccggccucccgucccGAagGCCCUGGCA-CAGUg -3' miRNA: 3'- uGCCCG-GUGU---------------UU--UGGGGCUGUuGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 2793 | 0.66 | 0.969611 |
Target: 5'- cCGGGCgCGCGccggccucccgucccGAagGCCCUGGCA-CAGUg -3' miRNA: 3'- uGCCCG-GUGU---------------UU--UGGGGCUGUuGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 1861 | 0.66 | 0.969611 |
Target: 5'- cCGGGCgCGCGccggccucccgucccGAagGCCCUGGCA-CAGUg -3' miRNA: 3'- uGCCCG-GUGU---------------UU--UGGGGCUGUuGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 929 | 0.66 | 0.969611 |
Target: 5'- cCGGGCgCGCGccggccucccgucccGAagGCCCUGGCA-CAGUg -3' miRNA: 3'- uGCCCG-GUGU---------------UU--UGGGGCUGUuGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 114283 | 0.66 | 0.968407 |
Target: 5'- cAUGGcuGCCACuauGGACgCCGGCGaggagaccgGCGGCg -3' miRNA: 3'- -UGCC--CGGUGu--UUUGgGGCUGU---------UGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 109138 | 0.66 | 0.968407 |
Target: 5'- uUGGGCacaGAGGCCUCGGCcGCuGCc -3' miRNA: 3'- uGCCCGgugUUUUGGGGCUGuUGuCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 110270 | 0.66 | 0.968407 |
Target: 5'- --uGGCCuGCAGAGCCCCGucugccaugaugGCcuCGGCg -3' miRNA: 3'- ugcCCGG-UGUUUUGGGGC------------UGuuGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 19509 | 0.66 | 0.968407 |
Target: 5'- cCGcGCCAUc---CCCCGccuGCAGCAGCg -3' miRNA: 3'- uGCcCGGUGuuuuGGGGC---UGUUGUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 44279 | 0.66 | 0.968407 |
Target: 5'- -aGGGCUGCAGAGCUaCC-ACAAC-GCa -3' miRNA: 3'- ugCCCGGUGUUUUGG-GGcUGUUGuCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 117070 | 0.66 | 0.968407 |
Target: 5'- cCGGGaCCACAccuuCgCCCGACucuucCAGCc -3' miRNA: 3'- uGCCC-GGUGUuuu-G-GGGCUGuu---GUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 87380 | 0.66 | 0.968407 |
Target: 5'- gUGGGCCcugauCAGAACCCUG-CGcCAGg -3' miRNA: 3'- uGCCCGGu----GUUUUGGGGCuGUuGUCg -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 160162 | 0.66 | 0.968407 |
Target: 5'- ---aGCCGCAugGCCCCGGCu--GGCu -3' miRNA: 3'- ugccCGGUGUuuUGGGGCUGuugUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 122800 | 0.66 | 0.968407 |
Target: 5'- gACGGGCgGcCGAGGCCgcgcugucggCCGcCGugAGCg -3' miRNA: 3'- -UGCCCGgU-GUUUUGG----------GGCuGUugUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 121158 | 0.66 | 0.968407 |
Target: 5'- cUGGGCCGCGcgcCCCUGAaacgagaaauCAAcCAGCu -3' miRNA: 3'- uGCCCGGUGUuuuGGGGCU----------GUU-GUCG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 138756 | 0.66 | 0.968407 |
Target: 5'- aGCGGccuGCCACG--GCCCUGGCuAACcuGCu -3' miRNA: 3'- -UGCC---CGGUGUuuUGGGGCUG-UUGu-CG- -5' |
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28928 | 3' | -54 | NC_006146.1 | + | 55446 | 0.66 | 0.968407 |
Target: 5'- aAUGGaGCUcCAGGACUCUGuCAugGGCa -3' miRNA: 3'- -UGCC-CGGuGUUUUGGGGCuGUugUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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