miRNA display CGI


Results 21 - 40 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 5' -57.1 NC_006146.1 + 146727 0.66 0.900253
Target:  5'- gUGGCCCCGGgcgcaGGGCaaggcGAUgGGCg -3'
miRNA:   3'- -ACCGGGGCCg----CCUGgaguaUUAgUCG- -5'
28928 5' -57.1 NC_006146.1 + 143650 0.66 0.900253
Target:  5'- gUGGCCCCGGgcgcaGGGCaaggcGAUgGGCg -3'
miRNA:   3'- -ACCGGGGCCg----CCUGgaguaUUAgUCG- -5'
28928 5' -57.1 NC_006146.1 + 124518 0.66 0.900253
Target:  5'- cGGCCCUGGCgagggacggGGGCCUgGgggagcugcuGUCGGa -3'
miRNA:   3'- aCCGGGGCCG---------CCUGGAgUau--------UAGUCg -5'
28928 5' -57.1 NC_006146.1 + 25253 0.66 0.900253
Target:  5'- cUGGCCCCgcccGGUGG-CCUUGggg-UAGCu -3'
miRNA:   3'- -ACCGGGG----CCGCCuGGAGUauuaGUCG- -5'
28928 5' -57.1 NC_006146.1 + 167096 0.66 0.899621
Target:  5'- cUGGCCUgacccagaccugaCuGUGGGCCacaaaggCGUAAUCGGCa -3'
miRNA:   3'- -ACCGGG-------------GcCGCCUGGa------GUAUUAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 2276 0.66 0.896427
Target:  5'- gGGCCCCGG-GGAagccccccgcucgccCCUCG-GGUC-GCg -3'
miRNA:   3'- aCCGGGGCCgCCU---------------GGAGUaUUAGuCG- -5'
28928 5' -57.1 NC_006146.1 + 1344 0.66 0.896427
Target:  5'- gGGCCCCGG-GGAagccccccgcucgccCCUCG-GGUC-GCg -3'
miRNA:   3'- aCCGGGGCCgCCU---------------GGAGUaUUAGuCG- -5'
28928 5' -57.1 NC_006146.1 + 3208 0.66 0.896427
Target:  5'- gGGCCCCGG-GGAagccccccgcucgccCCUCG-GGUC-GCg -3'
miRNA:   3'- aCCGGGGCCgCCU---------------GGAGUaUUAGuCG- -5'
28928 5' -57.1 NC_006146.1 + 69308 0.66 0.893831
Target:  5'- aGGaCCUCGuucUGGGCCUCGUcGUUGGCu -3'
miRNA:   3'- aCC-GGGGCc--GCCUGGAGUAuUAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 47875 0.66 0.893831
Target:  5'- cGGaCCUgGGCcgccucGGCCUCG--GUCAGCg -3'
miRNA:   3'- aCC-GGGgCCGc-----CUGGAGUauUAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 71005 0.66 0.893831
Target:  5'- -uGCgCCCGGgGGGCagaggcgCcgGAUCAGCu -3'
miRNA:   3'- acCG-GGGCCgCCUGga-----GuaUUAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 5510 0.66 0.893831
Target:  5'- cGGUCCUGGUcGAUCUCu--AUUGGCu -3'
miRNA:   3'- aCCGGGGCCGcCUGGAGuauUAGUCG- -5'
28928 5' -57.1 NC_006146.1 + 25374 0.66 0.887187
Target:  5'- gGGCCCCaaGGCGGccgcCCUCAguccccCAGa -3'
miRNA:   3'- aCCGGGG--CCGCCu---GGAGUauua--GUCg -5'
28928 5' -57.1 NC_006146.1 + 19218 0.66 0.887187
Target:  5'- gGGCCCCaaGGCGGccgcCCUCAguccccCAGa -3'
miRNA:   3'- aCCGGGG--CCGCCu---GGAGUauua--GUCg -5'
28928 5' -57.1 NC_006146.1 + 16140 0.66 0.887187
Target:  5'- gGGCCCCaaGGCGGccgcCCUCAguccccCAGa -3'
miRNA:   3'- aCCGGGG--CCGCCu---GGAGUauua--GUCg -5'
28928 5' -57.1 NC_006146.1 + 52918 0.66 0.887187
Target:  5'- gUGGCCCCccgggGGCGcuGGCCUCGUccgCcGCc -3'
miRNA:   3'- -ACCGGGG-----CCGC--CUGGAGUAuuaGuCG- -5'
28928 5' -57.1 NC_006146.1 + 28452 0.66 0.887187
Target:  5'- gGGCCCCaaGGCGGccgcCCUCAguccccCAGa -3'
miRNA:   3'- aCCGGGG--CCGCCu---GGAGUauua--GUCg -5'
28928 5' -57.1 NC_006146.1 + 108985 0.66 0.887187
Target:  5'- aGGCCUCGGagGGACC-CAcgcUCAGg -3'
miRNA:   3'- aCCGGGGCCg-CCUGGaGUauuAGUCg -5'
28928 5' -57.1 NC_006146.1 + 68032 0.66 0.887187
Target:  5'- gGGgCCCGGCcacGACCagGUGG-CGGCu -3'
miRNA:   3'- aCCgGGGCCGc--CUGGagUAUUaGUCG- -5'
28928 5' -57.1 NC_006146.1 + 13062 0.66 0.887187
Target:  5'- gGGCCCCaaGGCGGccgcCCUCAguccccCAGa -3'
miRNA:   3'- aCCGGGG--CCGCCu---GGAGUauua--GUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.