miRNA display CGI


Results 21 - 40 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28929 3' -53.7 NC_006146.1 + 128078 0.66 0.968575
Target:  5'- -cCGGCCUcaUGCAGGugcgggaGGGGCCg -3'
miRNA:   3'- guGCCGGGugACGUUCuuug---UCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 144837 0.66 0.968575
Target:  5'- -cCGGCCCACguugcgGCGGGccaauuGCAGcGGCUc -3'
miRNA:   3'- guGCCGGGUGa-----CGUUCuu----UGUC-CUGG- -5'
28929 3' -53.7 NC_006146.1 + 107075 0.66 0.968575
Target:  5'- -cCGGCgCCACgGCAAGAccugGAUAGucguGGCCa -3'
miRNA:   3'- guGCCG-GGUGaCGUUCU----UUGUC----CUGG- -5'
28929 3' -53.7 NC_006146.1 + 122957 0.66 0.968575
Target:  5'- aGCcuGUCCACgcaGCGGGAGGCGGGgagguGCCa -3'
miRNA:   3'- gUGc-CGGGUGa--CGUUCUUUGUCC-----UGG- -5'
28929 3' -53.7 NC_006146.1 + 8010 0.66 0.966704
Target:  5'- gCGCGGCaggACUGCGAGGAcugcaucuaucgcugGCAcccgcuGGACCc -3'
miRNA:   3'- -GUGCCGgg-UGACGUUCUU---------------UGU------CCUGG- -5'
28929 3' -53.7 NC_006146.1 + 33416 0.66 0.966704
Target:  5'- cCugGGCaCCGCUGCGccgccgcucgguccuGGGGcucCGGGugCa -3'
miRNA:   3'- -GugCCG-GGUGACGU---------------UCUUu--GUCCugG- -5'
28929 3' -53.7 NC_006146.1 + 43484 0.66 0.965414
Target:  5'- gGCGGCCguugaCACcgGCuccGGcgGCGGGGCCc -3'
miRNA:   3'- gUGCCGG-----GUGa-CGu--UCuuUGUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 152136 0.66 0.965414
Target:  5'- -cUGGCCUggGCUGUGAGGccuCgAGGGCCg -3'
miRNA:   3'- guGCCGGG--UGACGUUCUuu-G-UCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 155214 0.66 0.965414
Target:  5'- -cUGGCCUggGCUGUGAGGccuCgAGGGCCg -3'
miRNA:   3'- guGCCGGG--UGACGUUCUuu-G-UCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 49232 0.66 0.965414
Target:  5'- uCGauGCCCucCUGCAccuccGGGucCAGGGCCg -3'
miRNA:   3'- -GUgcCGGGu-GACGU-----UCUuuGUCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 158293 0.66 0.965414
Target:  5'- -cUGGCCUggGCUGUGAGGccuCgAGGGCCg -3'
miRNA:   3'- guGCCGGG--UGACGUUCUuu-G-UCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 149058 0.66 0.965414
Target:  5'- -cUGGCCUggGCUGUGAGGccuCgAGGGCCg -3'
miRNA:   3'- guGCCGGG--UGACGUUCUuu-G-UCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 145980 0.66 0.965414
Target:  5'- -cUGGCCUggGCUGUGAGGccuCgAGGGCCg -3'
miRNA:   3'- guGCCGGG--UGACGUUCUuu-G-UCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 142902 0.66 0.965414
Target:  5'- -cUGGCCUggGCUGUGAGGccuCgAGGGCCg -3'
miRNA:   3'- guGCCGGG--UGACGUUCUuu-G-UCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 76578 0.66 0.965414
Target:  5'- aCAUGGUCC-CcGUggGGAccgaGCAGGACg -3'
miRNA:   3'- -GUGCCGGGuGaCGuuCUU----UGUCCUGg -5'
28929 3' -53.7 NC_006146.1 + 39186 0.66 0.965414
Target:  5'- cCGgGGUCCACUGCAAuuacacGgcGgAGGACg -3'
miRNA:   3'- -GUgCCGGGUGACGUU------CuuUgUCCUGg -5'
28929 3' -53.7 NC_006146.1 + 59360 0.66 0.965414
Target:  5'- uUACGGCCCuCUGCAccAGuaaucuGAUuGGGCUu -3'
miRNA:   3'- -GUGCCGGGuGACGU--UCu-----UUGuCCUGG- -5'
28929 3' -53.7 NC_006146.1 + 52501 0.66 0.965414
Target:  5'- gACGGCCgAgUuggagaucuggGCGGGAAAgAGGACg -3'
miRNA:   3'- gUGCCGGgUgA-----------CGUUCUUUgUCCUGg -5'
28929 3' -53.7 NC_006146.1 + 10532 0.66 0.964424
Target:  5'- gGCGGCCUGCcaaggGCGcugAGAcgccaguuccccguGACAuGGACCg -3'
miRNA:   3'- gUGCCGGGUGa----CGU---UCU--------------UUGU-CCUGG- -5'
28929 3' -53.7 NC_006146.1 + 49759 0.66 0.964424
Target:  5'- gCGCGGCCCaggcccagacgccgGCUGaugugucucagGAGggGCAGGAa- -3'
miRNA:   3'- -GUGCCGGG--------------UGACg----------UUCuuUGUCCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.