miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28929 5' -61.7 NC_006146.1 + 40045 0.67 0.606002
Target:  5'- -cGCUUgUGACgCUgugagccaUGGCacaugugGGCGGCGGg -3'
miRNA:   3'- uaCGAGgACUGgGA--------ACCG-------CCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 169060 0.67 0.597178
Target:  5'- -cGC-CCgggGuCCCggggGGCGGCGcGCGGc -3'
miRNA:   3'- uaCGaGGa--CuGGGaa--CCGCCGC-CGCC- -5'
28929 5' -61.7 NC_006146.1 + 95246 0.67 0.597178
Target:  5'- cAUGaCUgCUGACCCgcGGCGucauauuuauGUGGCGGc -3'
miRNA:   3'- -UAC-GAgGACUGGGaaCCGC----------CGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 169992 0.67 0.597178
Target:  5'- -cGC-CCgggGuCCCggggGGCGGCGcGCGGc -3'
miRNA:   3'- uaCGaGGa--CuGGGaa--CCGCCGC-CGCC- -5'
28929 5' -61.7 NC_006146.1 + 167196 0.67 0.597178
Target:  5'- -cGC-CCgggGuCCCggggGGCGGCGcGCGGc -3'
miRNA:   3'- uaCGaGGa--CuGGGaa--CCGCCGC-CGCC- -5'
28929 5' -61.7 NC_006146.1 + 168128 0.67 0.597178
Target:  5'- -cGC-CCgggGuCCCggggGGCGGCGcGCGGc -3'
miRNA:   3'- uaCGaGGa--CuGGGaa--CCGCCGC-CGCC- -5'
28929 5' -61.7 NC_006146.1 + 3341 0.68 0.577645
Target:  5'- cGUGUUCCUGAUUgUgaGGCaGCGGgGGg -3'
miRNA:   3'- -UACGAGGACUGGgAa-CCGcCGCCgCC- -5'
28929 5' -61.7 NC_006146.1 + 73040 0.68 0.577645
Target:  5'- -cGUUCCacGGCCCggGGuCGGCGGCc- -3'
miRNA:   3'- uaCGAGGa-CUGGGaaCC-GCCGCCGcc -5'
28929 5' -61.7 NC_006146.1 + 72352 0.68 0.577645
Target:  5'- -cGCUUg-GGCCCUggaccGGCuGGCGGCGa -3'
miRNA:   3'- uaCGAGgaCUGGGAa----CCG-CCGCCGCc -5'
28929 5' -61.7 NC_006146.1 + 18840 0.68 0.56793
Target:  5'- aGUGCuUCCaGACCCcgGGCgcugccggGGUGGUGGa -3'
miRNA:   3'- -UACG-AGGaCUGGGaaCCG--------CCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 169538 0.68 0.567929
Target:  5'- cGUGUcCCgcGACCCgaggGGCGaGCGGgGGg -3'
miRNA:   3'- -UACGaGGa-CUGGGaa--CCGC-CGCCgCC- -5'
28929 5' -61.7 NC_006146.1 + 46266 0.68 0.567929
Target:  5'- gGUGCgcgUCCccgacguuuUGAgCCccGGUGGCGGCGGu -3'
miRNA:   3'- -UACG---AGG---------ACUgGGaaCCGCCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 168606 0.68 0.567929
Target:  5'- cGUGUcCCgcGACCCgaggGGCGaGCGGgGGg -3'
miRNA:   3'- -UACGaGGa-CUGGGaa--CCGC-CGCCgCC- -5'
28929 5' -61.7 NC_006146.1 + 167673 0.68 0.567929
Target:  5'- cGUGUcCCgcGACCCgaggGGCGaGCGGgGGg -3'
miRNA:   3'- -UACGaGGa-CUGGGaa--CCGC-CGCCgCC- -5'
28929 5' -61.7 NC_006146.1 + 62507 0.68 0.567929
Target:  5'- -aGCaCCUGGCCCUgGGgGGCuGCGu -3'
miRNA:   3'- uaCGaGGACUGGGAaCCgCCGcCGCc -5'
28929 5' -61.7 NC_006146.1 + 41349 0.68 0.548629
Target:  5'- ----aUCUGGCCCagggccUGGCGGUGGUGGc -3'
miRNA:   3'- uacgaGGACUGGGa-----ACCGCCGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 1226 0.68 0.542878
Target:  5'- -cGCUCUUGGCCggUGGCaGCauucuccaaaccuggGGCGGa -3'
miRNA:   3'- uaCGAGGACUGGgaACCGcCG---------------CCGCC- -5'
28929 5' -61.7 NC_006146.1 + 62006 0.68 0.539055
Target:  5'- -cGCUgCUGACUCgcUGGCcGCGGCGc -3'
miRNA:   3'- uaCGAgGACUGGGa-ACCGcCGCCGCc -5'
28929 5' -61.7 NC_006146.1 + 170499 0.68 0.539055
Target:  5'- -gGCUUCcccgGACCCccaGCGcGCGGCGGg -3'
miRNA:   3'- uaCGAGGa---CUGGGaacCGC-CGCCGCC- -5'
28929 5' -61.7 NC_006146.1 + 60306 0.68 0.538101
Target:  5'- -aGCUgggaccccaccgaCCUGACCCggaccgUGGCGagugucuacucuGCGGUGGg -3'
miRNA:   3'- uaCGA-------------GGACUGGGa-----ACCGC------------CGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.