miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2893 3' -58.4 NC_001493.1 + 47304 0.66 0.81517
Target:  5'- gACaguaUGGGUCGgagAGGGGGA--GGUAUCGg -3'
miRNA:   3'- -UGg---ACCUAGU---UCCCCCUgcCCAUGGC- -5'
2893 3' -58.4 NC_001493.1 + 133611 0.66 0.81517
Target:  5'- cGCCcGGG-CGGucGGGGGcCuGGGUGCCGc -3'
miRNA:   3'- -UGGaCCUaGUU--CCCCCuG-CCCAUGGC- -5'
2893 3' -58.4 NC_001493.1 + 18056 0.66 0.81517
Target:  5'- cGCCcGGG-CGGucGGGGGcCuGGGUGCCGc -3'
miRNA:   3'- -UGGaCCUaGUU--CCCCCuG-CCCAUGGC- -5'
2893 3' -58.4 NC_001493.1 + 55108 0.66 0.803899
Target:  5'- gACCUGGAUCccgcagauucucaaGAGGGGGAUGucGUugagcaGCCu -3'
miRNA:   3'- -UGGACCUAG--------------UUCCCCCUGCc-CA------UGGc -5'
2893 3' -58.4 NC_001493.1 + 40525 0.66 0.797722
Target:  5'- ---aGGAUCGuauGGGGGGCGacgaugugguGGUAUCGa -3'
miRNA:   3'- uggaCCUAGUu--CCCCCUGC----------CCAUGGC- -5'
2893 3' -58.4 NC_001493.1 + 103573 0.66 0.779692
Target:  5'- uGCCcGGGUCcguGGGGGGuCGGaacgcGCCGg -3'
miRNA:   3'- -UGGaCCUAGu--UCCCCCuGCCca---UGGC- -5'
2893 3' -58.4 NC_001493.1 + 35218 0.66 0.779692
Target:  5'- gACCUGGAggucccaAAGGGGGuAUuuGUACCGu -3'
miRNA:   3'- -UGGACCUag-----UUCCCCC-UGccCAUGGC- -5'
2893 3' -58.4 NC_001493.1 + 106742 0.66 0.769551
Target:  5'- gACCUGGGcuguuguUCgAAGGGGGcauucugugacGCGGGggggACCc -3'
miRNA:   3'- -UGGACCU-------AG-UUCCCCC-----------UGCCCa---UGGc -5'
2893 3' -58.4 NC_001493.1 + 129264 0.67 0.729607
Target:  5'- gGCCUcuccaccgcgguccGGggUAAGGGGGuACGGGUcacagaugGCCa -3'
miRNA:   3'- -UGGA--------------CCuaGUUCCCCC-UGCCCA--------UGGc -5'
2893 3' -58.4 NC_001493.1 + 62572 0.67 0.722791
Target:  5'- gGCCacGGG-CAcGGGGGGCGaGGUccACCGg -3'
miRNA:   3'- -UGGa-CCUaGUuCCCCCUGC-CCA--UGGC- -5'
2893 3' -58.4 NC_001493.1 + 13694 0.67 0.722791
Target:  5'- uCCgGGGUaAGGGGGGuACGGGUcacagaugGCCa -3'
miRNA:   3'- uGGaCCUAgUUCCCCC-UGCCCA--------UGGc -5'
2893 3' -58.4 NC_001493.1 + 36225 0.68 0.683221
Target:  5'- gGCCUGcg-CGGGGgugcucaguGGGGCGGGUugCGc -3'
miRNA:   3'- -UGGACcuaGUUCC---------CCCUGCCCAugGC- -5'
2893 3' -58.4 NC_001493.1 + 130468 0.68 0.663155
Target:  5'- cGCCccaugGGggCAGGGGGGAaGGGcuucGCCGu -3'
miRNA:   3'- -UGGa----CCuaGUUCCCCCUgCCCa---UGGC- -5'
2893 3' -58.4 NC_001493.1 + 14914 0.68 0.663155
Target:  5'- cGCCccaugGGggCAGGGGGGAaGGGcuucGCCGu -3'
miRNA:   3'- -UGGa----CCuaGUUCCCCCUgCCCa---UGGC- -5'
2893 3' -58.4 NC_001493.1 + 30487 0.69 0.653081
Target:  5'- cCCUGG-UCGGGGGgaucgggucGGACGGGgcgAUCGu -3'
miRNA:   3'- uGGACCuAGUUCCC---------CCUGCCCa--UGGC- -5'
2893 3' -58.4 NC_001493.1 + 44244 0.69 0.653081
Target:  5'- aACCcgaUGGAUCGcgccguaucgGGGGGGAuacCGGGUAUUa -3'
miRNA:   3'- -UGG---ACCUAGU----------UCCCCCU---GCCCAUGGc -5'
2893 3' -58.4 NC_001493.1 + 133215 1.09 0.001669
Target:  5'- cACCUGGAUCAAGGGGGACGGGUACCGg -3'
miRNA:   3'- -UGGACCUAGUUCCCCCUGCCCAUGGC- -5'
2893 3' -58.4 NC_001493.1 + 17660 1.09 0.001669
Target:  5'- cACCUGGAUCAAGGGGGACGGGUACCGg -3'
miRNA:   3'- -UGGACCUAGUUCCCCCUGCCCAUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.