miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2893 5' -60.6 NC_001493.1 + 99994 0.66 0.690501
Target:  5'- -cCAAGGCCaugGGGAUCCa-GGCCa -3'
miRNA:   3'- uaGUUCCGGgcaCCCUGGGagCUGGa -5'
2893 5' -60.6 NC_001493.1 + 101250 0.66 0.687517
Target:  5'- gGUCGGGGCCCGcUcgauagacacacccGGGAUgCUCGAUUc -3'
miRNA:   3'- -UAGUUCCGGGC-A--------------CCCUGgGAGCUGGa -5'
2893 5' -60.6 NC_001493.1 + 59607 0.66 0.650463
Target:  5'- uUCAauGGGUCCgGUGGauugguuguGGCCCUCGACg- -3'
miRNA:   3'- uAGU--UCCGGG-CACC---------CUGGGAGCUGga -5'
2893 5' -60.6 NC_001493.1 + 60221 0.66 0.629319
Target:  5'- -gCGGGcGCCgGUGGcuuggucGACCCUCGACa- -3'
miRNA:   3'- uaGUUC-CGGgCACC-------CUGGGAGCUGga -5'
2893 5' -60.6 NC_001493.1 + 91365 0.68 0.515365
Target:  5'- -aCGAGGCCUGUgagcgaaaguacgucGGGGCCUUgaUGACCg -3'
miRNA:   3'- uaGUUCCGGGCA---------------CCCUGGGA--GCUGGa -5'
2893 5' -60.6 NC_001493.1 + 75438 0.69 0.501983
Target:  5'- -aCAGGGCCgGUGGGACCaa-GAUa- -3'
miRNA:   3'- uaGUUCCGGgCACCCUGGgagCUGga -5'
2893 5' -60.6 NC_001493.1 + 42345 0.7 0.437599
Target:  5'- gAUCAAGGCUCauaaGAUCCUCGACCUc -3'
miRNA:   3'- -UAGUUCCGGGcaccCUGGGAGCUGGA- -5'
2893 5' -60.6 NC_001493.1 + 20671 0.7 0.428789
Target:  5'- gAUCGAGGCCCG-GGGGCCUaucacaUGGCUc -3'
miRNA:   3'- -UAGUUCCGGGCaCCCUGGGa-----GCUGGa -5'
2893 5' -60.6 NC_001493.1 + 70683 0.73 0.296439
Target:  5'- -gCAAGGCCCGggcgGGGAUCC-CGGCg- -3'
miRNA:   3'- uaGUUCCGGGCa---CCCUGGGaGCUGga -5'
2893 5' -60.6 NC_001493.1 + 17615 1.04 0.001831
Target:  5'- uAUCAAGGCCCGUGGGACCCUCGACCUc -3'
miRNA:   3'- -UAGUUCCGGGCACCCUGGGAGCUGGA- -5'
2893 5' -60.6 NC_001493.1 + 133170 1.04 0.001831
Target:  5'- uAUCAAGGCCCGUGGGACCCUCGACCUc -3'
miRNA:   3'- -UAGUUCCGGGCACCCUGGGAGCUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.