miRNA display CGI


Results 21 - 40 of 458 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28930 3' -66 NC_006146.1 + 146446 0.66 0.504344
Target:  5'- gGGCgAGuGGGCGGuccacacacgcGGG-CGCA-GCACCCa -3'
miRNA:   3'- -CCG-UC-CCCGCC-----------CCCgGUGUcCGUGGG- -5'
28930 3' -66 NC_006146.1 + 68739 0.66 0.504344
Target:  5'- cGCGGGguGGUGGaGGCC-CAGGUGgCCa -3'
miRNA:   3'- cCGUCC--CCGCCcCCGGuGUCCGUgGG- -5'
28930 3' -66 NC_006146.1 + 18867 0.66 0.504344
Target:  5'- gGGUGGuGGacguGCGGGGGCCuCA-GCcCCCa -3'
miRNA:   3'- -CCGUC-CC----CGCCCCCGGuGUcCGuGGG- -5'
28930 3' -66 NC_006146.1 + 16190 0.66 0.495397
Target:  5'- aGGCGGGguccGGCcucuccuGGGGCaGCAGGCucaacACCCc -3'
miRNA:   3'- -CCGUCC----CCGc------CCCCGgUGUCCG-----UGGG- -5'
28930 3' -66 NC_006146.1 + 159903 0.66 0.495397
Target:  5'- aGGCcGGGGCccucgaagauGGGGGgCACcaucuGGGCAUUg -3'
miRNA:   3'- -CCGuCCCCG----------CCCCCgGUG-----UCCGUGGg -5'
28930 3' -66 NC_006146.1 + 25424 0.66 0.495397
Target:  5'- aGGCGGGguccGGCcucuccuGGGGCaGCAGGCucaacACCCc -3'
miRNA:   3'- -CCGUCC----CCGc------CCCCGgUGUCCG-----UGGG- -5'
28930 3' -66 NC_006146.1 + 22346 0.66 0.495397
Target:  5'- aGGCGGGguccGGCcucuccuGGGGCaGCAGGCucaacACCCc -3'
miRNA:   3'- -CCGUCC----CCGc------CCCCGgUGUCCG-----UGGG- -5'
28930 3' -66 NC_006146.1 + 19268 0.66 0.495397
Target:  5'- aGGCGGGguccGGCcucuccuGGGGCaGCAGGCucaacACCCc -3'
miRNA:   3'- -CCGUCC----CCGc------CCCCGgUGUCCG-----UGGG- -5'
28930 3' -66 NC_006146.1 + 13112 0.66 0.495397
Target:  5'- aGGCGGGguccGGCcucuccuGGGGCaGCAGGCucaacACCCc -3'
miRNA:   3'- -CCGUCC----CCGc------CCCCGgUGUCCG-----UGGG- -5'
28930 3' -66 NC_006146.1 + 28502 0.66 0.495397
Target:  5'- aGGCGGGguccGGCcucuccuGGGGCaGCAGGCucaacACCCc -3'
miRNA:   3'- -CCGUCC----CCGc------CCCCGgUGUCCG-----UGGG- -5'
28930 3' -66 NC_006146.1 + 154544 0.66 0.495397
Target:  5'- aGGCGGaccCGaGGGGCuCugGGGCGCCg -3'
miRNA:   3'- -CCGUCcccGC-CCCCG-GugUCCGUGGg -5'
28930 3' -66 NC_006146.1 + 151466 0.66 0.495397
Target:  5'- aGGCGGaccCGaGGGGCuCugGGGCGCCg -3'
miRNA:   3'- -CCGUCcccGC-CCCCG-GugUCCGUGGg -5'
28930 3' -66 NC_006146.1 + 148388 0.66 0.495397
Target:  5'- aGGCGGaccCGaGGGGCuCugGGGCGCCg -3'
miRNA:   3'- -CCGUCcccGC-CCCCG-GugUCCGUGGg -5'
28930 3' -66 NC_006146.1 + 145310 0.66 0.495397
Target:  5'- aGGCGGaccCGaGGGGCuCugGGGCGCCg -3'
miRNA:   3'- -CCGUCcccGC-CCCCG-GugUCCGUGGg -5'
28930 3' -66 NC_006146.1 + 41758 0.66 0.495397
Target:  5'- cGGguGGGcuucccGCcGGaGGCCcugcgccCGGGCGCCCg -3'
miRNA:   3'- -CCguCCC------CGcCC-CCGGu------GUCCGUGGG- -5'
28930 3' -66 NC_006146.1 + 142232 0.66 0.495397
Target:  5'- aGGCGGaccCGaGGGGCuCugGGGCGCCg -3'
miRNA:   3'- -CCGUCcccGC-CCCCG-GugUCCGUGGg -5'
28930 3' -66 NC_006146.1 + 157622 0.66 0.495397
Target:  5'- aGGCGGaccCGaGGGGCuCugGGGCGCCg -3'
miRNA:   3'- -CCGUCcccGC-CCCCG-GugUCCGUGGg -5'
28930 3' -66 NC_006146.1 + 100273 0.66 0.486523
Target:  5'- uGGUGGGGGCaauGGGGCgG-AGGCAgCa -3'
miRNA:   3'- -CCGUCCCCGc--CCCCGgUgUCCGUgGg -5'
28930 3' -66 NC_006146.1 + 77838 0.66 0.486523
Target:  5'- aGGgGGGGGCGGGGG--GguGGgACUUu -3'
miRNA:   3'- -CCgUCCCCGCCCCCggUguCCgUGGG- -5'
28930 3' -66 NC_006146.1 + 26253 0.66 0.486523
Target:  5'- uGGcCAGaGGUGGGGG-CACGGGUggcggaauuaGCCUg -3'
miRNA:   3'- -CC-GUCcCCGCCCCCgGUGUCCG----------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.