miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28930 5' -50 NC_006146.1 + 60053 0.66 0.997623
Target:  5'- aGCAGCCGCuccugcGCGUCCUUcaGCUUa--- -3'
miRNA:   3'- -UGUUGGCGua----CGUAGGGA--UGAGaaac -5'
28930 5' -50 NC_006146.1 + 89488 0.66 0.997173
Target:  5'- cACGACuUGCccGCAuuUCCCaaaaGCUCUUUGg -3'
miRNA:   3'- -UGUUG-GCGuaCGU--AGGGa---UGAGAAAC- -5'
28930 5' -50 NC_006146.1 + 109314 0.66 0.996653
Target:  5'- cGCGGCCGC-UGCAgCCg-GCUCUUc- -3'
miRNA:   3'- -UGUUGGCGuACGUaGGgaUGAGAAac -5'
28930 5' -50 NC_006146.1 + 153489 0.66 0.996058
Target:  5'- -gGGCgCGCAUGgccugaGUCCCUACUUUUa- -3'
miRNA:   3'- ugUUG-GCGUACg-----UAGGGAUGAGAAac -5'
28930 5' -50 NC_006146.1 + 150411 0.66 0.996058
Target:  5'- -gGGCgCGCAUGgccugaGUCCCUACUUUUa- -3'
miRNA:   3'- ugUUG-GCGUACg-----UAGGGAUGAGAAac -5'
28930 5' -50 NC_006146.1 + 147333 0.66 0.996058
Target:  5'- -gGGCgCGCAUGgccugaGUCCCUACUUUUa- -3'
miRNA:   3'- ugUUG-GCGUACg-----UAGGGAUGAGAAac -5'
28930 5' -50 NC_006146.1 + 144255 0.66 0.996058
Target:  5'- -gGGCgCGCAUGgccugaGUCCCUACUUUUa- -3'
miRNA:   3'- ugUUG-GCGUACg-----UAGGGAUGAGAAac -5'
28930 5' -50 NC_006146.1 + 42645 0.66 0.996058
Target:  5'- aGCGGCCGCGUGUAcugcUCCaacugcgGCUCg--- -3'
miRNA:   3'- -UGUUGGCGUACGU----AGGga-----UGAGaaac -5'
28930 5' -50 NC_006146.1 + 156567 0.66 0.996058
Target:  5'- -gGGCgCGCAUGgccugaGUCCCUACUUUUa- -3'
miRNA:   3'- ugUUG-GCGUACg-----UAGGGAUGAGAAac -5'
28930 5' -50 NC_006146.1 + 24966 0.66 0.995379
Target:  5'- gGCAGCCGCuacuuuacGUGCucGUUUCUGUUCUUUGg -3'
miRNA:   3'- -UGUUGGCG--------UACG--UAGGGAUGAGAAAC- -5'
28930 5' -50 NC_006146.1 + 40608 0.67 0.994607
Target:  5'- aACcuCCGCAUGCcgCCgCUGCUUc--- -3'
miRNA:   3'- -UGuuGGCGUACGuaGG-GAUGAGaaac -5'
28930 5' -50 NC_006146.1 + 121513 0.68 0.989051
Target:  5'- gGCAugaCGCAggacaacgGCAUCCCcgUGCUCUUUu -3'
miRNA:   3'- -UGUug-GCGUa-------CGUAGGG--AUGAGAAAc -5'
28930 5' -50 NC_006146.1 + 70227 0.68 0.987535
Target:  5'- -gGGCCGCGaGCGUUUCUACUCc--- -3'
miRNA:   3'- ugUUGGCGUaCGUAGGGAUGAGaaac -5'
28930 5' -50 NC_006146.1 + 115291 0.68 0.987535
Target:  5'- uACGACUaCGUGUAcgaggCCCUGCUCUggGa -3'
miRNA:   3'- -UGUUGGcGUACGUa----GGGAUGAGAaaC- -5'
28930 5' -50 NC_006146.1 + 127341 0.68 0.984022
Target:  5'- uGCAuacACCGCGUGCcgcGUCuCCUACUgCUUc- -3'
miRNA:   3'- -UGU---UGGCGUACG---UAG-GGAUGA-GAAac -5'
28930 5' -50 NC_006146.1 + 115569 0.7 0.958507
Target:  5'- gGCGACCGCGg----CCCUACUCg--- -3'
miRNA:   3'- -UGUUGGCGUacguaGGGAUGAGaaac -5'
28930 5' -50 NC_006146.1 + 56614 0.7 0.954535
Target:  5'- -gGugCGCAUGCAUCUUgGCUCUg-- -3'
miRNA:   3'- ugUugGCGUACGUAGGGaUGAGAaac -5'
28930 5' -50 NC_006146.1 + 4900 1.1 0.009594
Target:  5'- cACAACCGCAUGCAUCCCUACUCUUUGg -3'
miRNA:   3'- -UGUUGGCGUACGUAGGGAUGAGAAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.