miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28931 5' -51.4 NC_006146.1 + 67483 0.66 0.99206
Target:  5'- gCCCCg--GUCCaggagCGAgGGGAGCACGa -3'
miRNA:   3'- -GGGGuuaCAGGg----GCUgUUUUCGUGUc -5'
28931 5' -51.4 NC_006146.1 + 123188 0.66 0.990909
Target:  5'- uCCCCAA---UCUCGAgGGccGAGCACAGg -3'
miRNA:   3'- -GGGGUUacaGGGGCUgUU--UUCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 148289 0.66 0.990909
Target:  5'- aCCCAGaacaGgagCUCCaGCAGGAGCGCGGa -3'
miRNA:   3'- gGGGUUa---Ca--GGGGcUGUUUUCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 129046 0.66 0.990909
Target:  5'- gCCCGAgcUGggCCCaGACGccGGCGCAGa -3'
miRNA:   3'- gGGGUU--ACa-GGGgCUGUuuUCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 19373 0.66 0.990787
Target:  5'- aCCCCAacagcGUGUCUCaCGuggccacguggcuGCAGgacAAGCACGGg -3'
miRNA:   3'- -GGGGU-----UACAGGG-GC-------------UGUU---UUCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 14031 0.67 0.989631
Target:  5'- gCCCCGuccacccUGUCCCCcGCA--GGC-CAGg -3'
miRNA:   3'- -GGGGUu------ACAGGGGcUGUuuUCGuGUC- -5'
28931 5' -51.4 NC_006146.1 + 20187 0.67 0.989631
Target:  5'- gCCCCGuccacccUGUCCCCcGCA--GGC-CAGg -3'
miRNA:   3'- -GGGGUu------ACAGGGGcUGUuuUCGuGUC- -5'
28931 5' -51.4 NC_006146.1 + 17109 0.67 0.989631
Target:  5'- gCCCCGuccacccUGUCCCCcGCA--GGC-CAGg -3'
miRNA:   3'- -GGGGUu------ACAGGGGcUGUuuUCGuGUC- -5'
28931 5' -51.4 NC_006146.1 + 23265 0.67 0.989631
Target:  5'- gCCCCGuccacccUGUCCCCcGCA--GGC-CAGg -3'
miRNA:   3'- -GGGGUu------ACAGGGGcUGUuuUCGuGUC- -5'
28931 5' -51.4 NC_006146.1 + 29421 0.67 0.989631
Target:  5'- gCCCCGuccacccUGUCCCCcGCA--GGC-CAGg -3'
miRNA:   3'- -GGGGUu------ACAGGGGcUGUuuUCGuGUC- -5'
28931 5' -51.4 NC_006146.1 + 116109 0.67 0.989631
Target:  5'- aCCCGAggGUCCCCGuaaaACAAGuggaagGGgACAGc -3'
miRNA:   3'- gGGGUUa-CAGGGGC----UGUUU------UCgUGUC- -5'
28931 5' -51.4 NC_006146.1 + 111256 0.67 0.989631
Target:  5'- gCCCCGGauagggucauUGUCCUgGGCcuGGAGCACu- -3'
miRNA:   3'- -GGGGUU----------ACAGGGgCUGu-UUUCGUGuc -5'
28931 5' -51.4 NC_006146.1 + 26343 0.67 0.989631
Target:  5'- gCCCCGuccacccUGUCCCCcGCA--GGC-CAGg -3'
miRNA:   3'- -GGGGUu------ACAGGGGcUGUuuUCGuGUC- -5'
28931 5' -51.4 NC_006146.1 + 153950 0.67 0.989631
Target:  5'- gCCCGccGcUCCCCGuu--GGGCACGGu -3'
miRNA:   3'- gGGGUuaC-AGGGGCuguuUUCGUGUC- -5'
28931 5' -51.4 NC_006146.1 + 137688 0.67 0.989631
Target:  5'- aCCCGGcUG-CCCCGGagcacCAGGAGCACc- -3'
miRNA:   3'- gGGGUU-ACaGGGGCU-----GUUUUCGUGuc -5'
28931 5' -51.4 NC_006146.1 + 106579 0.67 0.989631
Target:  5'- aCCCCGGcacauUGagcUCCCUccuGACGGAGGCAguGg -3'
miRNA:   3'- -GGGGUU-----AC---AGGGG---CUGUUUUCGUguC- -5'
28931 5' -51.4 NC_006146.1 + 134921 0.67 0.989631
Target:  5'- -aCCAgaGUGUCCCCcGCAgaGAGGCugGa -3'
miRNA:   3'- ggGGU--UACAGGGGcUGU--UUUCGugUc -5'
28931 5' -51.4 NC_006146.1 + 139447 0.67 0.989631
Target:  5'- cCCCCAcgGUgCCCGGgGGGGugccuGCACuGg -3'
miRNA:   3'- -GGGGUuaCAgGGGCUgUUUU-----CGUGuC- -5'
28931 5' -51.4 NC_006146.1 + 102680 0.67 0.989496
Target:  5'- cCCCCGcugugccggacGUaGUCUCCGACAAucuuguacuggagGAGCACc- -3'
miRNA:   3'- -GGGGU-----------UA-CAGGGGCUGUU-------------UUCGUGuc -5'
28931 5' -51.4 NC_006146.1 + 19902 0.67 0.988218
Target:  5'- gCCCuacGUCCUgGACAGGgcccGGCACAu -3'
miRNA:   3'- gGGGuuaCAGGGgCUGUUU----UCGUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.