miRNA display CGI


Results 21 - 40 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28932 3' -69.5 NC_006146.1 + 29243 0.66 0.395643
Target:  5'- -aGGGACCCCGgcGGCccgGUGUGCCaGCg- -3'
miRNA:   3'- ggCCCUGGGGC--CCG---CGCGCGGcCGga -5'
28932 3' -69.5 NC_006146.1 + 26165 0.66 0.395643
Target:  5'- -aGGGACCCCGgcGGCccgGUGUGCCaGCg- -3'
miRNA:   3'- ggCCCUGGGGC--CCG---CGCGCGGcCGga -5'
28932 3' -69.5 NC_006146.1 + 23087 0.66 0.395643
Target:  5'- -aGGGACCCCGgcGGCccgGUGUGCCaGCg- -3'
miRNA:   3'- ggCCCUGGGGC--CCG---CGCGCGGcCGga -5'
28932 3' -69.5 NC_006146.1 + 13854 0.66 0.395643
Target:  5'- -aGGGACCCCGgcGGCccgGUGUGCCaGCg- -3'
miRNA:   3'- ggCCCUGGGGC--CCG---CGCGCGGcCGga -5'
28932 3' -69.5 NC_006146.1 + 16932 0.66 0.395643
Target:  5'- -aGGGACCCCGgcGGCccgGUGUGCCaGCg- -3'
miRNA:   3'- ggCCCUGGGGC--CCG---CGCGCGGcCGga -5'
28932 3' -69.5 NC_006146.1 + 20009 0.66 0.395643
Target:  5'- -aGGGACCCCGgcGGCccgGUGUGCCaGCg- -3'
miRNA:   3'- ggCCCUGGGGC--CCG---CGCGCGGcCGga -5'
28932 3' -69.5 NC_006146.1 + 50877 0.66 0.395643
Target:  5'- gCGGGgucuguGCCCgGacuGGCGCGgGUgCGGCCUg -3'
miRNA:   3'- gGCCC------UGGGgC---CCGCGCgCG-GCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 99364 0.66 0.395643
Target:  5'- gUCGGcg-CCCGGGcCGCGCGUugaGGCCc -3'
miRNA:   3'- -GGCCcugGGGCCC-GCGCGCGg--CCGGa -5'
28932 3' -69.5 NC_006146.1 + 137020 0.66 0.395643
Target:  5'- gCCGGGcacACCCCGGGgaggaggcCGgGUGggGGCCUg -3'
miRNA:   3'- -GGCCC---UGGGGCCC--------GCgCGCggCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 137207 0.66 0.395643
Target:  5'- gCCGGGcacACCCCGGGgaggaagcCGgGUGggGGCCUg -3'
miRNA:   3'- -GGCCC---UGGGGCCC--------GCgCGCggCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 153608 0.66 0.395643
Target:  5'- -gGGGGCggCUGGGgGuCGgGCUGGCCUg -3'
miRNA:   3'- ggCCCUGg-GGCCCgC-GCgCGGCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 150530 0.66 0.395643
Target:  5'- -gGGGGCggCUGGGgGuCGgGCUGGCCUg -3'
miRNA:   3'- ggCCCUGg-GGCCCgC-GCgCGGCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 147452 0.66 0.395643
Target:  5'- -gGGGGCggCUGGGgGuCGgGCUGGCCUg -3'
miRNA:   3'- ggCCCUGg-GGCCCgC-GCgCGGCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 144374 0.66 0.395643
Target:  5'- -gGGGGCggCUGGGgGuCGgGCUGGCCUg -3'
miRNA:   3'- ggCCCUGg-GGCCCgC-GCgCGGCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 112864 0.66 0.394883
Target:  5'- gCGGaGACUaugcgcucguaggCCGGGCucuGCGCGaaGGCCg -3'
miRNA:   3'- gGCC-CUGG-------------GGCCCG---CGCGCggCCGGa -5'
28932 3' -69.5 NC_006146.1 + 157785 0.66 0.391094
Target:  5'- cCCGGGAgCCCCcguccacaaacaGGGCcaGguccgaguacuccucCGCGCUGGCCc -3'
miRNA:   3'- -GGCCCU-GGGG------------CCCG--C---------------GCGCGGCCGGa -5'
28932 3' -69.5 NC_006146.1 + 129292 0.66 0.388832
Target:  5'- cCCGGGcccagcggaccagccCCCCGGGCcucucCGCcUCGGCCa -3'
miRNA:   3'- -GGCCCu--------------GGGGCCCGc----GCGcGGCCGGa -5'
28932 3' -69.5 NC_006146.1 + 114570 0.66 0.38808
Target:  5'- uCCGGGcgGCCUccuucuCGcGGCGCaGCuaCGGCCUg -3'
miRNA:   3'- -GGCCC--UGGG------GC-CCGCG-CGcgGCCGGA- -5'
28932 3' -69.5 NC_006146.1 + 154555 0.66 0.38808
Target:  5'- -aGGGGCUCUGGG---GCGCCGGUCc -3'
miRNA:   3'- ggCCCUGGGGCCCgcgCGCGGCCGGa -5'
28932 3' -69.5 NC_006146.1 + 145321 0.66 0.38808
Target:  5'- -aGGGGCUCUGGG---GCGCCGGUCc -3'
miRNA:   3'- ggCCCUGGGGCCCgcgCGCGGCCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.