Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28932 | 5' | -58 | NC_006146.1 | + | 106679 | 0.67 | 0.754506 |
Target: 5'- --cGGCCCaGGCGCAgauGUGCCUcCUg- -3' miRNA: 3'- cuuCCGGGaCCGUGU---CACGGGuGAaa -5' |
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28932 | 5' | -58 | NC_006146.1 | + | 108429 | 0.67 | 0.734998 |
Target: 5'- uGgcGGCCaggUGGaCGCAGUGCCCGu--- -3' miRNA: 3'- -CuuCCGGg--ACC-GUGUCACGGGUgaaa -5' |
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28932 | 5' | -58 | NC_006146.1 | + | 25105 | 0.67 | 0.725103 |
Target: 5'- aGGGGCggcucaCCUGGUACauAGUGCCCAUc-- -3' miRNA: 3'- cUUCCG------GGACCGUG--UCACGGGUGaaa -5' |
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28932 | 5' | -58 | NC_006146.1 | + | 12934 | 0.67 | 0.715128 |
Target: 5'- uGGAGGCCCUGGCcccgccCGGUGgCCu---- -3' miRNA: 3'- -CUUCCGGGACCGu-----GUCACgGGugaaa -5' |
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28932 | 5' | -58 | NC_006146.1 | + | 25245 | 0.67 | 0.715128 |
Target: 5'- uGGAGGCCCUGGCcccgccCGGUGgCCu---- -3' miRNA: 3'- -CUUCCGGGACCGu-----GUCACgGGugaaa -5' |
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28932 | 5' | -58 | NC_006146.1 | + | 19089 | 0.67 | 0.715128 |
Target: 5'- uGGAGGCCCUGGCcccgccCGGUGgCCu---- -3' miRNA: 3'- -CUUCCGGGACCGu-----GUCACgGGugaaa -5' |
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28932 | 5' | -58 | NC_006146.1 | + | 28323 | 0.67 | 0.715128 |
Target: 5'- uGGAGGCCCUGGCcccgccCGGUGgCCu---- -3' miRNA: 3'- -CUUCCGGGACCGu-----GUCACgGGugaaa -5' |
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28932 | 5' | -58 | NC_006146.1 | + | 22167 | 0.67 | 0.715128 |
Target: 5'- uGGAGGCCCUGGCcccgccCGGUGgCCu---- -3' miRNA: 3'- -CUUCCGGGACCGu-----GUCACgGGugaaa -5' |
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28932 | 5' | -58 | NC_006146.1 | + | 16011 | 0.67 | 0.715128 |
Target: 5'- uGGAGGCCCUGGCcccgccCGGUGgCCu---- -3' miRNA: 3'- -CUUCCGGGACCGu-----GUCACgGGugaaa -5' |
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28932 | 5' | -58 | NC_006146.1 | + | 9483 | 0.67 | 0.715128 |
Target: 5'- cGGGGCCacacccgcCUGGCACAG-GCCUAUg-- -3' miRNA: 3'- cUUCCGG--------GACCGUGUCaCGGGUGaaa -5' |
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28932 | 5' | -58 | NC_006146.1 | + | 161199 | 0.68 | 0.705081 |
Target: 5'- cAAGGCaaCUGGCACcccGUGCcCCACUUc -3' miRNA: 3'- cUUCCGg-GACCGUGu--CACG-GGUGAAa -5' |
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28932 | 5' | -58 | NC_006146.1 | + | 154993 | 0.68 | 0.694972 |
Target: 5'- cAGGGCCC-GGCACAGaaguUGCUgGCUc- -3' miRNA: 3'- cUUCCGGGaCCGUGUC----ACGGgUGAaa -5' |
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28932 | 5' | -58 | NC_006146.1 | + | 122663 | 0.68 | 0.694972 |
Target: 5'- cGggGGCCCUccGCGCGGcGCUCACc-- -3' miRNA: 3'- -CuuCCGGGAc-CGUGUCaCGGGUGaaa -5' |
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28932 | 5' | -58 | NC_006146.1 | + | 64703 | 0.68 | 0.694972 |
Target: 5'- -cAGGCCCUGGCAgGagGCCCGg--- -3' miRNA: 3'- cuUCCGGGACCGUgUcaCGGGUgaaa -5' |
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28932 | 5' | -58 | NC_006146.1 | + | 23468 | 0.68 | 0.674603 |
Target: 5'- cGAGGCCCUGGCcguggccagguACGGgcugguggGCUCGCUc- -3' miRNA: 3'- cUUCCGGGACCG-----------UGUCa-------CGGGUGAaa -5' |
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28932 | 5' | -58 | NC_006146.1 | + | 69595 | 0.68 | 0.672557 |
Target: 5'- -cAGGUCCUGGgGCAGcgagacguccagGCCCACg-- -3' miRNA: 3'- cuUCCGGGACCgUGUCa-----------CGGGUGaaa -5' |
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28932 | 5' | -58 | NC_006146.1 | + | 167659 | 0.68 | 0.664361 |
Target: 5'- cGggGGCCCgGGgGC-GUGuCCCGCg-- -3' miRNA: 3'- -CuuCCGGGaCCgUGuCAC-GGGUGaaa -5' |
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28932 | 5' | -58 | NC_006146.1 | + | 50730 | 0.68 | 0.664361 |
Target: 5'- cGAGGGCCCggucggGGUACGuGUGUCCGg--- -3' miRNA: 3'- -CUUCCGGGa-----CCGUGU-CACGGGUgaaa -5' |
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28932 | 5' | -58 | NC_006146.1 | + | 10227 | 0.68 | 0.654093 |
Target: 5'- --cGGCCCUGGuCAU-GUGCCgGCUc- -3' miRNA: 3'- cuuCCGGGACC-GUGuCACGGgUGAaa -5' |
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28932 | 5' | -58 | NC_006146.1 | + | 161722 | 0.69 | 0.633512 |
Target: 5'- aGAAGGCUUgggggugggUGGCACGGUgggaGCCCGCc-- -3' miRNA: 3'- -CUUCCGGG---------ACCGUGUCA----CGGGUGaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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