miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28933 5' -56 NC_006146.1 + 59238 0.66 0.907839
Target:  5'- gGAC-AUGGCCUccaUGGGCCuggguguUCAGgGCCu -3'
miRNA:   3'- gUUGcUACUGGG---AUCCGG-------AGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 52563 0.66 0.907839
Target:  5'- ---aGAUGuucacgcGCCCgccGGcCCUCAGCGUCa -3'
miRNA:   3'- guugCUAC-------UGGGau-CC-GGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 128176 0.66 0.90228
Target:  5'- gCAGCGAcgccgggaggcGGCCCagggGGGCgCcgCGGCGCCg -3'
miRNA:   3'- -GUUGCUa----------CUGGGa---UCCG-Ga-GUCGCGG- -5'
28933 5' -56 NC_006146.1 + 101215 0.66 0.90228
Target:  5'- uCAGCGuguuccUGGCCCUGGGCaaCAGCuUCu -3'
miRNA:   3'- -GUUGCu-----ACUGGGAUCCGgaGUCGcGG- -5'
28933 5' -56 NC_006146.1 + 141746 0.66 0.90228
Target:  5'- gGACGGUGcACCgggaAGG-CUCAGCGUCu -3'
miRNA:   3'- gUUGCUAC-UGGga--UCCgGAGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 22697 0.66 0.90228
Target:  5'- --cUGAUGuuCCUGGGCCUgAuGUGCUc -3'
miRNA:   3'- guuGCUACugGGAUCCGGAgU-CGCGG- -5'
28933 5' -56 NC_006146.1 + 95082 0.66 0.90228
Target:  5'- cUggUGcAUGuCCCgcaGGGCCUCgaaggcGGCGCCc -3'
miRNA:   3'- -GuuGC-UACuGGGa--UCCGGAG------UCGCGG- -5'
28933 5' -56 NC_006146.1 + 48820 0.66 0.90228
Target:  5'- gGGCGGUGuCCagaaAGGCCuUCAGCuGCUc -3'
miRNA:   3'- gUUGCUACuGGga--UCCGG-AGUCG-CGG- -5'
28933 5' -56 NC_006146.1 + 20929 0.66 0.901651
Target:  5'- cCGACcugcaGGCCCUGGcccccacucccacGCCUgGGCGCCc -3'
miRNA:   3'- -GUUGcua--CUGGGAUC-------------CGGAgUCGCGG- -5'
28933 5' -56 NC_006146.1 + 118228 0.66 0.900386
Target:  5'- gGACGAUGuCCUggacgagGGGgcgaggcuggacgcCCUCAuGCGCCa -3'
miRNA:   3'- gUUGCUACuGGGa------UCC--------------GGAGU-CGCGG- -5'
28933 5' -56 NC_006146.1 + 128508 0.67 0.895886
Target:  5'- aCGGCGucgggGUGGCCCUGGGgcgccCCUCgcccacccuggcGGCGCg -3'
miRNA:   3'- -GUUGC-----UACUGGGAUCC-----GGAG------------UCGCGg -5'
28933 5' -56 NC_006146.1 + 57997 0.67 0.895886
Target:  5'- gGACGAgcuggaGGCCC-GGGUCUCGGCcuucgcgcagaGCCc -3'
miRNA:   3'- gUUGCUa-----CUGGGaUCCGGAGUCG-----------CGG- -5'
28933 5' -56 NC_006146.1 + 55490 0.67 0.895886
Target:  5'- gAACGA-GGCCC--GGCCgcCAGCuGCCu -3'
miRNA:   3'- gUUGCUaCUGGGauCCGGa-GUCG-CGG- -5'
28933 5' -56 NC_006146.1 + 114955 0.67 0.895886
Target:  5'- gCGGCGAUGGCgggGGGCacgCAGCaGCCc -3'
miRNA:   3'- -GUUGCUACUGggaUCCGga-GUCG-CGG- -5'
28933 5' -56 NC_006146.1 + 19945 0.67 0.895886
Target:  5'- --cCGGccuCCCUGGGCagaUCAGgGCCg -3'
miRNA:   3'- guuGCUacuGGGAUCCGg--AGUCgCGG- -5'
28933 5' -56 NC_006146.1 + 48863 0.67 0.889265
Target:  5'- -cGCGAa-GCCgUcGGCCUCcaGGCGCCa -3'
miRNA:   3'- guUGCUacUGGgAuCCGGAG--UCGCGG- -5'
28933 5' -56 NC_006146.1 + 52312 0.67 0.889265
Target:  5'- -cGCGuaggugcUGACCCUgacguGGGCCggGGUGCCc -3'
miRNA:   3'- guUGCu------ACUGGGA-----UCCGGagUCGCGG- -5'
28933 5' -56 NC_006146.1 + 48093 0.67 0.889265
Target:  5'- aCGGCGGccGACagCgcGGCCUCGGcCGCCc -3'
miRNA:   3'- -GUUGCUa-CUGg-GauCCGGAGUC-GCGG- -5'
28933 5' -56 NC_006146.1 + 120194 0.67 0.88242
Target:  5'- uCAACGccGGCUUUcAGGCCugccggUCGGUGCCu -3'
miRNA:   3'- -GUUGCuaCUGGGA-UCCGG------AGUCGCGG- -5'
28933 5' -56 NC_006146.1 + 115735 0.67 0.88242
Target:  5'- aCAGCGuccACCCU-GGCCUCccGGCGgCu -3'
miRNA:   3'- -GUUGCuacUGGGAuCCGGAG--UCGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.